Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12772 | 5' | -59.5 | NC_003387.1 | + | 5451 | 0.69 | 0.310569 |
Target: 5'- ---gCCGACGGCgGCCaaaGCGgugacCAGGGCa -3' miRNA: 3'- uagaGGUUGUCGgCGG---CGCa----GUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 8384 | 0.71 | 0.235841 |
Target: 5'- uGUCUCCuaucCAGUugcgUGCgGUGUCGGGGCc -3' miRNA: 3'- -UAGAGGuu--GUCG----GCGgCGCAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 6029 | 0.7 | 0.254594 |
Target: 5'- --gUCCAGCGGCacgaGgUGCGgCAGGGCg -3' miRNA: 3'- uagAGGUUGUCGg---CgGCGCaGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 24299 | 0.66 | 0.458576 |
Target: 5'- ---aCCAugAGCCGCCGCagcagCcGGGUc -3' miRNA: 3'- uagaGGUugUCGGCGGCGca---GuCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 9891 | 0.71 | 0.229852 |
Target: 5'- gAUCgccgCCAugAucGCCucGCCGcCGUCGGGGCu -3' miRNA: 3'- -UAGa---GGUugU--CGG--CGGC-GCAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 12227 | 0.7 | 0.254594 |
Target: 5'- ---aCCGGCGGUCGCCaGCG-CAGcGGCg -3' miRNA: 3'- uagaGGUUGUCGGCGG-CGCaGUC-CCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 52266 | 0.7 | 0.267764 |
Target: 5'- gGUCgCCGuCGGCCGCCGCGgc--GGCg -3' miRNA: 3'- -UAGaGGUuGUCGGCGGCGCagucCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 22985 | 0.69 | 0.310569 |
Target: 5'- --gUCCAGCucgcccgcguAGCUGCCGuCGUCGgccuGGGCg -3' miRNA: 3'- uagAGGUUG----------UCGGCGGC-GCAGU----CCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 11268 | 0.66 | 0.448849 |
Target: 5'- -----gGGCAGUCaggGCgGCGUCAGGGCc -3' miRNA: 3'- uagaggUUGUCGG---CGgCGCAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 52212 | 0.66 | 0.429744 |
Target: 5'- gAUCUUCAaccGCGGUCGCCaCG-CGGGcGCg -3' miRNA: 3'- -UAGAGGU---UGUCGGCGGcGCaGUCC-CG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 27535 | 0.67 | 0.411125 |
Target: 5'- -gCUgCcGCGGCgGCgGCGcCGGGGCc -3' miRNA: 3'- uaGAgGuUGUCGgCGgCGCaGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 16918 | 0.67 | 0.402005 |
Target: 5'- cAUCgcgCCGACGG-CGCCGaggcacaGcUCGGGGCu -3' miRNA: 3'- -UAGa--GGUUGUCgGCGGCg------C-AGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 41965 | 0.67 | 0.402005 |
Target: 5'- cUCguaCCGGCGaucGCgGCCGUGUCAGcGGUc -3' miRNA: 3'- uAGa--GGUUGU---CGgCGGCGCAGUC-CCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 50596 | 0.67 | 0.402005 |
Target: 5'- -aCUCCAcguCGGCCGCUgggGCGUC--GGCg -3' miRNA: 3'- uaGAGGUu--GUCGGCGG---CGCAGucCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 25129 | 0.67 | 0.374565 |
Target: 5'- cUCguaCCAGCGGCaCaCCGCGcagccgaUCGGGGCu -3' miRNA: 3'- uAGa--GGUUGUCG-GcGGCGC-------AGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 14306 | 0.68 | 0.36684 |
Target: 5'- ---aCCAGC-GCCaGCCGC-UCGGGGUg -3' miRNA: 3'- uagaGGUUGuCGG-CGGCGcAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 50068 | 0.68 | 0.36684 |
Target: 5'- uGUCgUCguACAGCaCGCCGCGcCGGuGCg -3' miRNA: 3'- -UAG-AGguUGUCG-GCGGCGCaGUCcCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 3916 | 0.68 | 0.358386 |
Target: 5'- ---aCCGGCGggacgauggccGCCGCCGCGgcgaUCAGcGGCg -3' miRNA: 3'- uagaGGUUGU-----------CGGCGGCGC----AGUC-CCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 22655 | 0.69 | 0.31819 |
Target: 5'- cUCgccCCGGCGGCCGUcagggCGCGcUCGuGGGCg -3' miRNA: 3'- uAGa--GGUUGUCGGCG-----GCGC-AGU-CCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 31125 | 0.69 | 0.310569 |
Target: 5'- ---aCCAGCAG-CGCCGCGUCGGccucGCu -3' miRNA: 3'- uagaGGUUGUCgGCGGCGCAGUCc---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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