Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12772 | 5' | -59.5 | NC_003387.1 | + | 42719 | 0.68 | 0.341891 |
Target: 5'- ---aCCGGCAacGCCGaCCugcuCGUCAGGGCg -3' miRNA: 3'- uagaGGUUGU--CGGC-GGc---GCAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 12411 | 0.68 | 0.350069 |
Target: 5'- -aCUCCggUGcGCCGCUGUGggagcugaUUAGGGCg -3' miRNA: 3'- uaGAGGuuGU-CGGCGGCGC--------AGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 3916 | 0.68 | 0.358386 |
Target: 5'- ---aCCGGCGggacgauggccGCCGCCGCGgcgaUCAGcGGCg -3' miRNA: 3'- uagaGGUUGU-----------CGGCGGCGC----AGUC-CCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 19846 | 0.68 | 0.358386 |
Target: 5'- aAUCUCuCGACGacGCCGaCGCGgcgCuGGGCg -3' miRNA: 3'- -UAGAG-GUUGU--CGGCgGCGCa--GuCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 28596 | 0.68 | 0.358386 |
Target: 5'- ---cUCAACA-CCGCCGCGUacGGGCa -3' miRNA: 3'- uagaGGUUGUcGGCGGCGCAguCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 14306 | 0.68 | 0.36684 |
Target: 5'- ---aCCAGC-GCCaGCCGC-UCGGGGUg -3' miRNA: 3'- uagaGGUUGuCGG-CGGCGcAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 50068 | 0.68 | 0.36684 |
Target: 5'- uGUCgUCguACAGCaCGCCGCGcCGGuGCg -3' miRNA: 3'- -UAG-AGguUGUCG-GCGGCGCaGUCcCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 25129 | 0.67 | 0.374565 |
Target: 5'- cUCguaCCAGCGGCaCaCCGCGcagccgaUCGGGGCu -3' miRNA: 3'- uAGa--GGUUGUCG-GcGGCGC-------AGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 34991 | 0.67 | 0.375431 |
Target: 5'- ---cCUGGCGGCCcgGCCGgGcCGGGGCg -3' miRNA: 3'- uagaGGUUGUCGG--CGGCgCaGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 1069 | 0.67 | 0.375431 |
Target: 5'- aAUCgUUAGCGGCacuauuGCCaGUGUCAGGGCc -3' miRNA: 3'- -UAGaGGUUGUCGg-----CGG-CGCAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 50692 | 0.67 | 0.384156 |
Target: 5'- cUCggcgaCGGCGGCCGUCgGCGgcaccgagCAGGGCc -3' miRNA: 3'- uAGag---GUUGUCGGCGG-CGCa-------GUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 25189 | 0.67 | 0.393015 |
Target: 5'- ---cCCGGCGccGCCGCCGCGgCAGcGCa -3' miRNA: 3'- uagaGGUUGU--CGGCGGCGCaGUCcCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 40108 | 0.67 | 0.393015 |
Target: 5'- -cCUCgcaGGCGGCgGCCcgGCGUC-GGGCa -3' miRNA: 3'- uaGAGg--UUGUCGgCGG--CGCAGuCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 16182 | 0.67 | 0.4011 |
Target: 5'- -cUUCCAAUAGgCGgCGUcggugcuGUCGGGGCu -3' miRNA: 3'- uaGAGGUUGUCgGCgGCG-------CAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 44523 | 0.67 | 0.402005 |
Target: 5'- uUCgugCCG--GGCCGCCcgGCGccgCAGGGCu -3' miRNA: 3'- uAGa--GGUugUCGGCGG--CGCa--GUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 16918 | 0.67 | 0.402005 |
Target: 5'- cAUCgcgCCGACGG-CGCCGaggcacaGcUCGGGGCu -3' miRNA: 3'- -UAGa--GGUUGUCgGCGGCg------C-AGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 41965 | 0.67 | 0.402005 |
Target: 5'- cUCguaCCGGCGaucGCgGCCGUGUCAGcGGUc -3' miRNA: 3'- uAGa--GGUUGU---CGgCGGCGCAGUC-CCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 50596 | 0.67 | 0.402005 |
Target: 5'- -aCUCCAcguCGGCCGCUgggGCGUC--GGCg -3' miRNA: 3'- uaGAGGUu--GUCGGCGG---CGCAGucCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 1651 | 0.67 | 0.411125 |
Target: 5'- ----aCGACGGCCGCCaCGUCGaggagguguGGGCc -3' miRNA: 3'- uagagGUUGUCGGCGGcGCAGU---------CCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 27535 | 0.67 | 0.411125 |
Target: 5'- -gCUgCcGCGGCgGCgGCGcCGGGGCc -3' miRNA: 3'- uaGAgGuUGUCGgCGgCGCaGUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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