miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 5' -59.5 NC_003387.1 + 41965 0.67 0.402005
Target:  5'- cUCguaCCGGCGaucGCgGCCGUGUCAGcGGUc -3'
miRNA:   3'- uAGa--GGUUGU---CGgCGGCGCAGUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 50596 0.67 0.402005
Target:  5'- -aCUCCAcguCGGCCGCUgggGCGUC--GGCg -3'
miRNA:   3'- uaGAGGUu--GUCGGCGG---CGCAGucCCG- -5'
12772 5' -59.5 NC_003387.1 + 16182 0.67 0.4011
Target:  5'- -cUUCCAAUAGgCGgCGUcggugcuGUCGGGGCu -3'
miRNA:   3'- uaGAGGUUGUCgGCgGCG-------CAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 40108 0.67 0.393015
Target:  5'- -cCUCgcaGGCGGCgGCCcgGCGUC-GGGCa -3'
miRNA:   3'- uaGAGg--UUGUCGgCGG--CGCAGuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 25189 0.67 0.393015
Target:  5'- ---cCCGGCGccGCCGCCGCGgCAGcGCa -3'
miRNA:   3'- uagaGGUUGU--CGGCGGCGCaGUCcCG- -5'
12772 5' -59.5 NC_003387.1 + 50692 0.67 0.384156
Target:  5'- cUCggcgaCGGCGGCCGUCgGCGgcaccgagCAGGGCc -3'
miRNA:   3'- uAGag---GUUGUCGGCGG-CGCa-------GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 1069 0.67 0.375431
Target:  5'- aAUCgUUAGCGGCacuauuGCCaGUGUCAGGGCc -3'
miRNA:   3'- -UAGaGGUUGUCGg-----CGG-CGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 34991 0.67 0.375431
Target:  5'- ---cCUGGCGGCCcgGCCGgGcCGGGGCg -3'
miRNA:   3'- uagaGGUUGUCGG--CGGCgCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 25129 0.67 0.374565
Target:  5'- cUCguaCCAGCGGCaCaCCGCGcagccgaUCGGGGCu -3'
miRNA:   3'- uAGa--GGUUGUCG-GcGGCGC-------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 50068 0.68 0.36684
Target:  5'- uGUCgUCguACAGCaCGCCGCGcCGGuGCg -3'
miRNA:   3'- -UAG-AGguUGUCG-GCGGCGCaGUCcCG- -5'
12772 5' -59.5 NC_003387.1 + 14306 0.68 0.36684
Target:  5'- ---aCCAGC-GCCaGCCGC-UCGGGGUg -3'
miRNA:   3'- uagaGGUUGuCGG-CGGCGcAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 3916 0.68 0.358386
Target:  5'- ---aCCGGCGggacgauggccGCCGCCGCGgcgaUCAGcGGCg -3'
miRNA:   3'- uagaGGUUGU-----------CGGCGGCGC----AGUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 28596 0.68 0.358386
Target:  5'- ---cUCAACA-CCGCCGCGUacGGGCa -3'
miRNA:   3'- uagaGGUUGUcGGCGGCGCAguCCCG- -5'
12772 5' -59.5 NC_003387.1 + 19846 0.68 0.358386
Target:  5'- aAUCUCuCGACGacGCCGaCGCGgcgCuGGGCg -3'
miRNA:   3'- -UAGAG-GUUGU--CGGCgGCGCa--GuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 12411 0.68 0.350069
Target:  5'- -aCUCCggUGcGCCGCUGUGggagcugaUUAGGGCg -3'
miRNA:   3'- uaGAGGuuGU-CGGCGGCGC--------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 42719 0.68 0.341891
Target:  5'- ---aCCGGCAacGCCGaCCugcuCGUCAGGGCg -3'
miRNA:   3'- uagaGGUUGU--CGGC-GGc---GCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 13701 0.68 0.325951
Target:  5'- cGUC-CCGagcGCGGCCcagGCgGCG-CAGGGCg -3'
miRNA:   3'- -UAGaGGU---UGUCGG---CGgCGCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 22655 0.69 0.31819
Target:  5'- cUCgccCCGGCGGCCGUcagggCGCGcUCGuGGGCg -3'
miRNA:   3'- uAGa--GGUUGUCGGCG-----GCGC-AGU-CCCG- -5'
12772 5' -59.5 NC_003387.1 + 5451 0.69 0.310569
Target:  5'- ---gCCGACGGCgGCCaaaGCGgugacCAGGGCa -3'
miRNA:   3'- uagaGGUUGUCGgCGG---CGCa----GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 41846 0.69 0.310569
Target:  5'- gGUCggCCAGCGGCCGaCgGCgGUCGugaugagcGGGCa -3'
miRNA:   3'- -UAGa-GGUUGUCGGC-GgCG-CAGU--------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.