miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 5' -59.5 NC_003387.1 + 16574 0.73 0.150438
Target:  5'- --aUCCGGCcGaCCGCCuCGUCGGGGCu -3'
miRNA:   3'- uagAGGUUGuC-GGCGGcGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 16918 0.67 0.402005
Target:  5'- cAUCgcgCCGACGG-CGCCGaggcacaGcUCGGGGCu -3'
miRNA:   3'- -UAGa--GGUUGUCgGCGGCg------C-AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 17081 0.66 0.47836
Target:  5'- gGUCggCCAGugcccgccCGGCCGCCucgGCGggcuccUCGGGGCc -3'
miRNA:   3'- -UAGa-GGUU--------GUCGGCGG---CGC------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 19846 0.68 0.358386
Target:  5'- aAUCUCuCGACGacGCCGaCGCGgcgCuGGGCg -3'
miRNA:   3'- -UAGAG-GUUGU--CGGCgGCGCa--GuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 22152 0.66 0.439237
Target:  5'- -aCUCgCGGCacggcgcguaccGGCCGCgGCGgcgguccaugUCGGGGCg -3'
miRNA:   3'- uaGAG-GUUG------------UCGGCGgCGC----------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 22655 0.69 0.31819
Target:  5'- cUCgccCCGGCGGCCGUcagggCGCGcUCGuGGGCg -3'
miRNA:   3'- uAGa--GGUUGUCGGCG-----GCGC-AGU-CCCG- -5'
12772 5' -59.5 NC_003387.1 + 22985 0.69 0.310569
Target:  5'- --gUCCAGCucgcccgcguAGCUGCCGuCGUCGgccuGGGCg -3'
miRNA:   3'- uagAGGUUG----------UCGGCGGC-GCAGU----CCCG- -5'
12772 5' -59.5 NC_003387.1 + 23422 0.73 0.172131
Target:  5'- cUCgugCCcGCGGUCGCCGgGgaaCAGGGCg -3'
miRNA:   3'- uAGa--GGuUGUCGGCGGCgCa--GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 23833 0.76 0.105217
Target:  5'- ---cCCGGCgcccgcgccuaAGCCGCCGCaGUCGGGGCc -3'
miRNA:   3'- uagaGGUUG-----------UCGGCGGCG-CAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 24299 0.66 0.458576
Target:  5'- ---aCCAugAGCCGCCGCagcagCcGGGUc -3'
miRNA:   3'- uagaGGUugUCGGCGGCGca---GuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 25129 0.67 0.374565
Target:  5'- cUCguaCCAGCGGCaCaCCGCGcagccgaUCGGGGCu -3'
miRNA:   3'- uAGa--GGUUGUCG-GcGGCGC-------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 25189 0.67 0.393015
Target:  5'- ---cCCGGCGccGCCGCCGCGgCAGcGCa -3'
miRNA:   3'- uagaGGUUGU--CGGCGGCGCaGUCcCG- -5'
12772 5' -59.5 NC_003387.1 + 27535 0.67 0.411125
Target:  5'- -gCUgCcGCGGCgGCgGCGcCGGGGCc -3'
miRNA:   3'- uaGAgGuUGUCGgCGgCGCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 28596 0.68 0.358386
Target:  5'- ---cUCAACA-CCGCCGCGUacGGGCa -3'
miRNA:   3'- uagaGGUUGUcGGCGGCGCAguCCCG- -5'
12772 5' -59.5 NC_003387.1 + 30748 0.66 0.47836
Target:  5'- cUCgUCgGGCAGCa-CCGUGUC-GGGCg -3'
miRNA:   3'- uAG-AGgUUGUCGgcGGCGCAGuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 31125 0.69 0.310569
Target:  5'- ---aCCAGCAG-CGCCGCGUCGGccucGCu -3'
miRNA:   3'- uagaGGUUGUCgGCGGCGCAGUCc---CG- -5'
12772 5' -59.5 NC_003387.1 + 32823 0.73 0.154568
Target:  5'- aAUCUCagcGCAGCCcgcaCCGCGgggCGGGGCg -3'
miRNA:   3'- -UAGAGgu-UGUCGGc---GGCGCa--GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 34991 0.67 0.375431
Target:  5'- ---cCUGGCGGCCcgGCCGgGcCGGGGCg -3'
miRNA:   3'- uagaGGUUGUCGG--CGGCgCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 40108 0.67 0.393015
Target:  5'- -cCUCgcaGGCGGCgGCCcgGCGUC-GGGCa -3'
miRNA:   3'- uaGAGg--UUGUCGgCGG--CGCAGuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 41146 0.83 0.031755
Target:  5'- ---gCCGACGGCCGCUGCGagugUCAGGGCg -3'
miRNA:   3'- uagaGGUUGUCGGCGGCGC----AGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.