miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 5' -59.5 NC_003387.1 + 845 0.66 0.439237
Target:  5'- uUCUCggCGACGGCCuUCGCGaucacCGGGGCc -3'
miRNA:   3'- uAGAG--GUUGUCGGcGGCGCa----GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 1069 0.67 0.375431
Target:  5'- aAUCgUUAGCGGCacuauuGCCaGUGUCAGGGCc -3'
miRNA:   3'- -UAGaGGUUGUCGg-----CGG-CGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 1651 0.67 0.411125
Target:  5'- ----aCGACGGCCGCCaCGUCGaggagguguGGGCc -3'
miRNA:   3'- uagagGUUGUCGGCGGcGCAGU---------CCCG- -5'
12772 5' -59.5 NC_003387.1 + 2033 0.67 0.418512
Target:  5'- ---gCCGACGGCCGCCGuCGccgagcuggccgCGGuGGCg -3'
miRNA:   3'- uagaGGUUGUCGGCGGC-GCa-----------GUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 3916 0.68 0.358386
Target:  5'- ---aCCGGCGggacgauggccGCCGCCGCGgcgaUCAGcGGCg -3'
miRNA:   3'- uagaGGUUGU-----------CGGCGGCGC----AGUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 5451 0.69 0.310569
Target:  5'- ---gCCGACGGCgGCCaaaGCGgugacCAGGGCa -3'
miRNA:   3'- uagaGGUUGUCGgCGG---CGCa----GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 6029 0.7 0.254594
Target:  5'- --gUCCAGCGGCacgaGgUGCGgCAGGGCg -3'
miRNA:   3'- uagAGGUUGUCGg---CgGCGCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 6042 0.7 0.24196
Target:  5'- -aCUCgGACAcGCUgcugGCCGCGgccaagCAGGGCa -3'
miRNA:   3'- uaGAGgUUGU-CGG----CGGCGCa-----GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 8384 0.71 0.235841
Target:  5'- uGUCUCCuaucCAGUugcgUGCgGUGUCGGGGCc -3'
miRNA:   3'- -UAGAGGuu--GUCG----GCGgCGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 9002 0.66 0.47836
Target:  5'- -gCUCCcGCAuGCCGCCGuCGagCAccuggcGGGCg -3'
miRNA:   3'- uaGAGGuUGU-CGGCGGC-GCa-GU------CCCG- -5'
12772 5' -59.5 NC_003387.1 + 9891 0.71 0.229852
Target:  5'- gAUCgccgCCAugAucGCCucGCCGcCGUCGGGGCu -3'
miRNA:   3'- -UAGa---GGUugU--CGG--CGGC-GCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 11084 0.69 0.29502
Target:  5'- gAUCUUUAagggcguGCAGCCGCuCGCGaCcGGGCu -3'
miRNA:   3'- -UAGAGGU-------UGUCGGCG-GCGCaGuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 11268 0.66 0.448849
Target:  5'- -----gGGCAGUCaggGCgGCGUCAGGGCc -3'
miRNA:   3'- uagaggUUGUCGG---CGgCGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 11442 0.66 0.458576
Target:  5'- cUCgugcCCGcgcuGCAGCuCGCCGC--CGGGGCg -3'
miRNA:   3'- uAGa---GGU----UGUCG-GCGGCGcaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 12227 0.7 0.254594
Target:  5'- ---aCCGGCGGUCGCCaGCG-CAGcGGCg -3'
miRNA:   3'- uagaGGUUGUCGGCGG-CGCaGUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 12358 0.66 0.439237
Target:  5'- cAUCaCCAAC-GCCGCCGCGaCGGcccGCa -3'
miRNA:   3'- -UAGaGGUUGuCGGCGGCGCaGUCc--CG- -5'
12772 5' -59.5 NC_003387.1 + 12411 0.68 0.350069
Target:  5'- -aCUCCggUGcGCCGCUGUGggagcugaUUAGGGCg -3'
miRNA:   3'- uaGAGGuuGU-CGGCGGCGC--------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 13701 0.68 0.325951
Target:  5'- cGUC-CCGagcGCGGCCcagGCgGCG-CAGGGCg -3'
miRNA:   3'- -UAGaGGU---UGUCGG---CGgCGCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 14306 0.68 0.36684
Target:  5'- ---aCCAGC-GCCaGCCGC-UCGGGGUg -3'
miRNA:   3'- uagaGGUUGuCGG-CGGCGcAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 16182 0.67 0.4011
Target:  5'- -cUUCCAAUAGgCGgCGUcggugcuGUCGGGGCu -3'
miRNA:   3'- uaGAGGUUGUCgGCgGCG-------CAGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.