miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 5' -59.5 NC_003387.1 + 52159 1.1 0.00029
Target:  5'- aAUCUCCAACAGCCGCCGCGUCAGGGCa -3'
miRNA:   3'- -UAGAGGUUGUCGGCGGCGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 41146 0.83 0.031755
Target:  5'- ---gCCGACGGCCGCUGCGagugUCAGGGCg -3'
miRNA:   3'- uagaGGUUGUCGGCGGCGC----AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 23833 0.76 0.105217
Target:  5'- ---cCCGGCgcccgcgccuaAGCCGCCGCaGUCGGGGCc -3'
miRNA:   3'- uagaGGUUG-----------UCGGCGGCG-CAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 16574 0.73 0.150438
Target:  5'- --aUCCGGCcGaCCGCCuCGUCGGGGCu -3'
miRNA:   3'- uagAGGUUGuC-GGCGGcGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 32823 0.73 0.154568
Target:  5'- aAUCUCagcGCAGCCcgcaCCGCGgggCGGGGCg -3'
miRNA:   3'- -UAGAGgu-UGUCGGc---GGCGCa--GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 23422 0.73 0.172131
Target:  5'- cUCgugCCcGCGGUCGCCGgGgaaCAGGGCg -3'
miRNA:   3'- uAGa--GGuUGUCGGCGGCgCa--GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 49432 0.73 0.172131
Target:  5'- ---cCCGAguCGGCgGCCGUGUCGGGGUc -3'
miRNA:   3'- uagaGGUU--GUCGgCGGCGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 9891 0.71 0.229852
Target:  5'- gAUCgccgCCAugAucGCCucGCCGcCGUCGGGGCu -3'
miRNA:   3'- -UAGa---GGUugU--CGG--CGGC-GCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 8384 0.71 0.235841
Target:  5'- uGUCUCCuaucCAGUugcgUGCgGUGUCGGGGCc -3'
miRNA:   3'- -UAGAGGuu--GUCG----GCGgCGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 6042 0.7 0.24196
Target:  5'- -aCUCgGACAcGCUgcugGCCGCGgccaagCAGGGCa -3'
miRNA:   3'- uaGAGgUUGU-CGG----CGGCGCa-----GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 12227 0.7 0.254594
Target:  5'- ---aCCGGCGGUCGCCaGCG-CAGcGGCg -3'
miRNA:   3'- uagaGGUUGUCGGCGG-CGCaGUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 6029 0.7 0.254594
Target:  5'- --gUCCAGCGGCacgaGgUGCGgCAGGGCg -3'
miRNA:   3'- uagAGGUUGUCGg---CgGCGCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 52266 0.7 0.267764
Target:  5'- gGUCgCCGuCGGCCGCCGCGgc--GGCg -3'
miRNA:   3'- -UAGaGGUuGUCGGCGGCGCagucCCG- -5'
12772 5' -59.5 NC_003387.1 + 11084 0.69 0.29502
Target:  5'- gAUCUUUAagggcguGCAGCCGCuCGCGaCcGGGCu -3'
miRNA:   3'- -UAGAGGU-------UGUCGGCG-GCGCaGuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 5451 0.69 0.310569
Target:  5'- ---gCCGACGGCgGCCaaaGCGgugacCAGGGCa -3'
miRNA:   3'- uagaGGUUGUCGgCGG---CGCa----GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 41846 0.69 0.310569
Target:  5'- gGUCggCCAGCGGCCGaCgGCgGUCGugaugagcGGGCa -3'
miRNA:   3'- -UAGa-GGUUGUCGGC-GgCG-CAGU--------CCCG- -5'
12772 5' -59.5 NC_003387.1 + 22985 0.69 0.310569
Target:  5'- --gUCCAGCucgcccgcguAGCUGCCGuCGUCGgccuGGGCg -3'
miRNA:   3'- uagAGGUUG----------UCGGCGGC-GCAGU----CCCG- -5'
12772 5' -59.5 NC_003387.1 + 31125 0.69 0.310569
Target:  5'- ---aCCAGCAG-CGCCGCGUCGGccucGCu -3'
miRNA:   3'- uagaGGUUGUCgGCGGCGCAGUCc---CG- -5'
12772 5' -59.5 NC_003387.1 + 22655 0.69 0.31819
Target:  5'- cUCgccCCGGCGGCCGUcagggCGCGcUCGuGGGCg -3'
miRNA:   3'- uAGa--GGUUGUCGGCG-----GCGC-AGU-CCCG- -5'
12772 5' -59.5 NC_003387.1 + 13701 0.68 0.325951
Target:  5'- cGUC-CCGagcGCGGCCcagGCgGCG-CAGGGCg -3'
miRNA:   3'- -UAGaGGU---UGUCGG---CGgCGCaGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.