miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 5' -59.5 NC_003387.1 + 41146 0.83 0.031755
Target:  5'- ---gCCGACGGCCGCUGCGagugUCAGGGCg -3'
miRNA:   3'- uagaGGUUGUCGGCGGCGC----AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 43465 0.67 0.420372
Target:  5'- ---aCCGGCGGCgaCGUCcUGUCGGGGCg -3'
miRNA:   3'- uagaGGUUGUCG--GCGGcGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 11442 0.66 0.458576
Target:  5'- cUCgugcCCGcgcuGCAGCuCGCCGC--CGGGGCg -3'
miRNA:   3'- uAGa---GGU----UGUCG-GCGGCGcaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 30748 0.66 0.47836
Target:  5'- cUCgUCgGGCAGCa-CCGUGUC-GGGCg -3'
miRNA:   3'- uAG-AGgUUGUCGgcGGCGCAGuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 11084 0.69 0.29502
Target:  5'- gAUCUUUAagggcguGCAGCCGCuCGCGaCcGGGCu -3'
miRNA:   3'- -UAGAGGU-------UGUCGGCG-GCGCaGuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 5451 0.69 0.310569
Target:  5'- ---gCCGACGGCgGCCaaaGCGgugacCAGGGCa -3'
miRNA:   3'- uagaGGUUGUCGgCGG---CGCa----GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 13701 0.68 0.325951
Target:  5'- cGUC-CCGagcGCGGCCcagGCgGCG-CAGGGCg -3'
miRNA:   3'- -UAGaGGU---UGUCGG---CGgCGCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 42719 0.68 0.341891
Target:  5'- ---aCCGGCAacGCCGaCCugcuCGUCAGGGCg -3'
miRNA:   3'- uagaGGUUGU--CGGC-GGc---GCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 28596 0.68 0.358386
Target:  5'- ---cUCAACA-CCGCCGCGUacGGGCa -3'
miRNA:   3'- uagaGGUUGUcGGCGGCGCAguCCCG- -5'
12772 5' -59.5 NC_003387.1 + 2033 0.67 0.418512
Target:  5'- ---gCCGACGGCCGCCGuCGccgagcuggccgCGGuGGCg -3'
miRNA:   3'- uagaGGUUGUCGGCGGC-GCa-----------GUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 40108 0.67 0.393015
Target:  5'- -cCUCgcaGGCGGCgGCCcgGCGUC-GGGCa -3'
miRNA:   3'- uaGAGg--UUGUCGgCGG--CGCAGuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 19846 0.68 0.358386
Target:  5'- aAUCUCuCGACGacGCCGaCGCGgcgCuGGGCg -3'
miRNA:   3'- -UAGAG-GUUGU--CGGCgGCGCa--GuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 23833 0.76 0.105217
Target:  5'- ---cCCGGCgcccgcgccuaAGCCGCCGCaGUCGGGGCc -3'
miRNA:   3'- uagaGGUUG-----------UCGGCGGCG-CAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 44523 0.67 0.402005
Target:  5'- uUCgugCCG--GGCCGCCcgGCGccgCAGGGCu -3'
miRNA:   3'- uAGa--GGUugUCGGCGG--CGCa--GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 32823 0.73 0.154568
Target:  5'- aAUCUCagcGCAGCCcgcaCCGCGgggCGGGGCg -3'
miRNA:   3'- -UAGAGgu-UGUCGGc---GGCGCa--GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 12411 0.68 0.350069
Target:  5'- -aCUCCggUGcGCCGCUGUGggagcugaUUAGGGCg -3'
miRNA:   3'- uaGAGGuuGU-CGGCGGCGC--------AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 1651 0.67 0.411125
Target:  5'- ----aCGACGGCCGCCaCGUCGaggagguguGGGCc -3'
miRNA:   3'- uagagGUUGUCGGCGGcGCAGU---------CCCG- -5'
12772 5' -59.5 NC_003387.1 + 12358 0.66 0.439237
Target:  5'- cAUCaCCAAC-GCCGCCGCGaCGGcccGCa -3'
miRNA:   3'- -UAGaGGUUGuCGGCGGCGCaGUCc--CG- -5'
12772 5' -59.5 NC_003387.1 + 6042 0.7 0.24196
Target:  5'- -aCUCgGACAcGCUgcugGCCGCGgccaagCAGGGCa -3'
miRNA:   3'- uaGAGgUUGU-CGG----CGGCGCa-----GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 41846 0.69 0.310569
Target:  5'- gGUCggCCAGCGGCCGaCgGCgGUCGugaugagcGGGCa -3'
miRNA:   3'- -UAGa-GGUUGUCGGC-GgCG-CAGU--------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.