miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 5' -59.5 NC_003387.1 + 52266 0.7 0.267764
Target:  5'- gGUCgCCGuCGGCCGCCGCGgc--GGCg -3'
miRNA:   3'- -UAGaGGUuGUCGGCGGCGCagucCCG- -5'
12772 5' -59.5 NC_003387.1 + 52212 0.66 0.429744
Target:  5'- gAUCUUCAaccGCGGUCGCCaCG-CGGGcGCg -3'
miRNA:   3'- -UAGAGGU---UGUCGGCGGcGCaGUCC-CG- -5'
12772 5' -59.5 NC_003387.1 + 52159 1.1 0.00029
Target:  5'- aAUCUCCAACAGCCGCCGCGUCAGGGCa -3'
miRNA:   3'- -UAGAGGUUGUCGGCGGCGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 51417 0.66 0.47836
Target:  5'- cGUCgUCGAC-GUCGCC-CGcCAGGGCg -3'
miRNA:   3'- -UAGaGGUUGuCGGCGGcGCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 50959 0.66 0.47836
Target:  5'- cUCgggcgCCAGC-GCCGCCGCc---GGGCu -3'
miRNA:   3'- uAGa----GGUUGuCGGCGGCGcaguCCCG- -5'
12772 5' -59.5 NC_003387.1 + 50692 0.67 0.384156
Target:  5'- cUCggcgaCGGCGGCCGUCgGCGgcaccgagCAGGGCc -3'
miRNA:   3'- uAGag---GUUGUCGGCGG-CGCa-------GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 50596 0.67 0.402005
Target:  5'- -aCUCCAcguCGGCCGCUgggGCGUC--GGCg -3'
miRNA:   3'- uaGAGGUu--GUCGGCGG---CGCAGucCCG- -5'
12772 5' -59.5 NC_003387.1 + 50068 0.68 0.36684
Target:  5'- uGUCgUCguACAGCaCGCCGCGcCGGuGCg -3'
miRNA:   3'- -UAG-AGguUGUCG-GCGGCGCaGUCcCG- -5'
12772 5' -59.5 NC_003387.1 + 49432 0.73 0.172131
Target:  5'- ---cCCGAguCGGCgGCCGUGUCGGGGUc -3'
miRNA:   3'- uagaGGUU--GUCGgCGGCGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 48471 0.66 0.458576
Target:  5'- aAUCUCUuGCggcguagugaGGCCGUCGCGgc-GGGCc -3'
miRNA:   3'- -UAGAGGuUG----------UCGGCGGCGCaguCCCG- -5'
12772 5' -59.5 NC_003387.1 + 44523 0.67 0.402005
Target:  5'- uUCgugCCG--GGCCGCCcgGCGccgCAGGGCu -3'
miRNA:   3'- uAGa--GGUugUCGGCGG--CGCa--GUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 44014 0.66 0.439237
Target:  5'- uGUCgUCgAGCGGCuCGUCGaCGUCGGucGGCa -3'
miRNA:   3'- -UAG-AGgUUGUCG-GCGGC-GCAGUC--CCG- -5'
12772 5' -59.5 NC_003387.1 + 43465 0.67 0.420372
Target:  5'- ---aCCGGCGGCgaCGUCcUGUCGGGGCg -3'
miRNA:   3'- uagaGGUUGUCG--GCGGcGCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 42719 0.68 0.341891
Target:  5'- ---aCCGGCAacGCCGaCCugcuCGUCAGGGCg -3'
miRNA:   3'- uagaGGUUGU--CGGC-GGc---GCAGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 41965 0.67 0.402005
Target:  5'- cUCguaCCGGCGaucGCgGCCGUGUCAGcGGUc -3'
miRNA:   3'- uAGa--GGUUGU---CGgCGGCGCAGUC-CCG- -5'
12772 5' -59.5 NC_003387.1 + 41846 0.69 0.310569
Target:  5'- gGUCggCCAGCGGCCGaCgGCgGUCGugaugagcGGGCa -3'
miRNA:   3'- -UAGa-GGUUGUCGGC-GgCG-CAGU--------CCCG- -5'
12772 5' -59.5 NC_003387.1 + 41146 0.83 0.031755
Target:  5'- ---gCCGACGGCCGCUGCGagugUCAGGGCg -3'
miRNA:   3'- uagaGGUUGUCGGCGGCGC----AGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 40108 0.67 0.393015
Target:  5'- -cCUCgcaGGCGGCgGCCcgGCGUC-GGGCa -3'
miRNA:   3'- uaGAGg--UUGUCGgCGG--CGCAGuCCCG- -5'
12772 5' -59.5 NC_003387.1 + 34991 0.67 0.375431
Target:  5'- ---cCUGGCGGCCcgGCCGgGcCGGGGCg -3'
miRNA:   3'- uagaGGUUGUCGG--CGGCgCaGUCCCG- -5'
12772 5' -59.5 NC_003387.1 + 32823 0.73 0.154568
Target:  5'- aAUCUCagcGCAGCCcgcaCCGCGgggCGGGGCg -3'
miRNA:   3'- -UAGAGgu-UGUCGGc---GGCGCa--GUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.