Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12772 | 5' | -59.5 | NC_003387.1 | + | 17081 | 0.66 | 0.47836 |
Target: 5'- gGUCggCCAGugcccgccCGGCCGCCucgGCGggcuccUCGGGGCc -3' miRNA: 3'- -UAGa-GGUU--------GUCGGCGG---CGC------AGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 50959 | 0.66 | 0.47836 |
Target: 5'- cUCgggcgCCAGC-GCCGCCGCc---GGGCu -3' miRNA: 3'- uAGa----GGUUGuCGGCGGCGcaguCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 9002 | 0.66 | 0.47836 |
Target: 5'- -gCUCCcGCAuGCCGCCGuCGagCAccuggcGGGCg -3' miRNA: 3'- uaGAGGuUGU-CGGCGGC-GCa-GU------CCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 48471 | 0.66 | 0.458576 |
Target: 5'- aAUCUCUuGCggcguagugaGGCCGUCGCGgc-GGGCc -3' miRNA: 3'- -UAGAGGuUG----------UCGGCGGCGCaguCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 24299 | 0.66 | 0.458576 |
Target: 5'- ---aCCAugAGCCGCCGCagcagCcGGGUc -3' miRNA: 3'- uagaGGUugUCGGCGGCGca---GuCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 11268 | 0.66 | 0.448849 |
Target: 5'- -----gGGCAGUCaggGCgGCGUCAGGGCc -3' miRNA: 3'- uagaggUUGUCGG---CGgCGCAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 44014 | 0.66 | 0.439237 |
Target: 5'- uGUCgUCgAGCGGCuCGUCGaCGUCGGucGGCa -3' miRNA: 3'- -UAG-AGgUUGUCG-GCGGC-GCAGUC--CCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 22152 | 0.66 | 0.439237 |
Target: 5'- -aCUCgCGGCacggcgcguaccGGCCGCgGCGgcgguccaugUCGGGGCg -3' miRNA: 3'- uaGAG-GUUG------------UCGGCGgCGC----------AGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 16182 | 0.67 | 0.4011 |
Target: 5'- -cUUCCAAUAGgCGgCGUcggugcuGUCGGGGCu -3' miRNA: 3'- uaGAGGUUGUCgGCgGCG-------CAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 50596 | 0.67 | 0.402005 |
Target: 5'- -aCUCCAcguCGGCCGCUgggGCGUC--GGCg -3' miRNA: 3'- uaGAGGUu--GUCGGCGG---CGCAGucCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 41965 | 0.67 | 0.402005 |
Target: 5'- cUCguaCCGGCGaucGCgGCCGUGUCAGcGGUc -3' miRNA: 3'- uAGa--GGUUGU---CGgCGGCGCAGUC-CCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 16918 | 0.67 | 0.402005 |
Target: 5'- cAUCgcgCCGACGG-CGCCGaggcacaGcUCGGGGCu -3' miRNA: 3'- -UAGa--GGUUGUCgGCGGCg------C-AGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 27535 | 0.67 | 0.411125 |
Target: 5'- -gCUgCcGCGGCgGCgGCGcCGGGGCc -3' miRNA: 3'- uaGAgGuUGUCGgCGgCGCaGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 52212 | 0.66 | 0.429744 |
Target: 5'- gAUCUUCAaccGCGGUCGCCaCG-CGGGcGCg -3' miRNA: 3'- -UAGAGGU---UGUCGGCGGcGCaGUCC-CG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 845 | 0.66 | 0.439237 |
Target: 5'- uUCUCggCGACGGCCuUCGCGaucacCGGGGCc -3' miRNA: 3'- uAGAG--GUUGUCGGcGGCGCa----GUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 30748 | 0.66 | 0.47836 |
Target: 5'- cUCgUCgGGCAGCa-CCGUGUC-GGGCg -3' miRNA: 3'- uAG-AGgUUGUCGgcGGCGCAGuCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 23833 | 0.76 | 0.105217 |
Target: 5'- ---cCCGGCgcccgcgccuaAGCCGCCGCaGUCGGGGCc -3' miRNA: 3'- uagaGGUUG-----------UCGGCGGCG-CAGUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 32823 | 0.73 | 0.154568 |
Target: 5'- aAUCUCagcGCAGCCcgcaCCGCGgggCGGGGCg -3' miRNA: 3'- -UAGAGgu-UGUCGGc---GGCGCa--GUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 6042 | 0.7 | 0.24196 |
Target: 5'- -aCUCgGACAcGCUgcugGCCGCGgccaagCAGGGCa -3' miRNA: 3'- uaGAGgUUGU-CGG----CGGCGCa-----GUCCCG- -5' |
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12772 | 5' | -59.5 | NC_003387.1 | + | 11084 | 0.69 | 0.29502 |
Target: 5'- gAUCUUUAagggcguGCAGCCGCuCGCGaCcGGGCu -3' miRNA: 3'- -UAGAGGU-------UGUCGGCG-GCGCaGuCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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