miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 3' -60.7 NC_003387.1 + 11872 0.69 0.276847
Target:  5'- cAUUGUGUCggugaGCGCGUCGCGCacgaucgGCGCCGu -3'
miRNA:   3'- -UAGCGCGG-----UGUGCAGCGCG-------CGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 13027 0.77 0.069409
Target:  5'- --aGCGcCCGCACGUCGCuGCGCaacGCCGAc -3'
miRNA:   3'- uagCGC-GGUGUGCAGCG-CGCG---UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 13059 0.69 0.284407
Target:  5'- gAUCGCGagcugcugcucCCACGCcaUGCGCGaCACCGGg -3'
miRNA:   3'- -UAGCGC-----------GGUGUGcaGCGCGC-GUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 13539 0.71 0.215908
Target:  5'- gGUCGaGCUGCACG-CGaauguCGCGCACCGAc -3'
miRNA:   3'- -UAGCgCGGUGUGCaGC-----GCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 15785 0.7 0.233057
Target:  5'- aGUCGCGCUuuagcgugauCAUGUCGCGCuGgGCUGAc -3'
miRNA:   3'- -UAGCGCGGu---------GUGCAGCGCG-CgUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 15931 0.68 0.328511
Target:  5'- cGUCGCGgUggcguGCGCGUCG-GCcaGCGCCGAg -3'
miRNA:   3'- -UAGCGCgG-----UGUGCAGCgCG--CGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 16415 0.67 0.37747
Target:  5'- cAUCGCGUuCACAgaucCGUUGCGCGCcaugcguucuggACCGu -3'
miRNA:   3'- -UAGCGCG-GUGU----GCAGCGCGCG------------UGGCu -5'
12773 3' -60.7 NC_003387.1 + 16737 0.71 0.215908
Target:  5'- gAUCGUGCC-CuCGUCGuCGC-CGCCGAg -3'
miRNA:   3'- -UAGCGCGGuGuGCAGC-GCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 17207 0.67 0.37747
Target:  5'- uGUCGCGCaACACGUCuGCGuCGgccCACCa- -3'
miRNA:   3'- -UAGCGCGgUGUGCAG-CGC-GC---GUGGcu -5'
12773 3' -60.7 NC_003387.1 + 18332 0.66 0.412731
Target:  5'- --gGCGUgGC-CGUCGUGCcCGCCGGu -3'
miRNA:   3'- uagCGCGgUGuGCAGCGCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 18433 0.74 0.120581
Target:  5'- cUCGggcaGCCACGUGUaCGCGCGCACCGu -3'
miRNA:   3'- uAGCg---CGGUGUGCA-GCGCGCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 18497 0.67 0.344295
Target:  5'- gGUCGUGCCGCuuGagC-CGgGCACCGAc -3'
miRNA:   3'- -UAGCGCGGUGugCa-GcGCgCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 18600 0.71 0.205086
Target:  5'- uUCGCGCacCGCgACGUCGaCGC-CGCCGAu -3'
miRNA:   3'- uAGCGCG--GUG-UGCAGC-GCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 18682 0.67 0.363945
Target:  5'- -cCGCcCCACACGccgaccaggugcgggUCGCGCaGCGCCa- -3'
miRNA:   3'- uaGCGcGGUGUGC---------------AGCGCG-CGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 18760 0.66 0.394846
Target:  5'- -aUGCGCUuuGCGUCGCGUGUcgACUGc -3'
miRNA:   3'- uaGCGCGGugUGCAGCGCGCG--UGGCu -5'
12773 3' -60.7 NC_003387.1 + 19119 0.72 0.172654
Target:  5'- gGUCGUGCCACAccucggcgggaucuuCGUCGCGCacGCgcucagcaagGCCGAa -3'
miRNA:   3'- -UAGCGCGGUGU---------------GCAGCGCG--CG----------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 19220 0.7 0.239023
Target:  5'- cUgGCGUugaacuugauCACGCGaUCGCGgGCGCCGAc -3'
miRNA:   3'- uAgCGCG----------GUGUGC-AGCGCgCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 19398 0.67 0.37747
Target:  5'- cGUUGUGCa--GCGUCGUGCGgGCCu- -3'
miRNA:   3'- -UAGCGCGgugUGCAGCGCGCgUGGcu -5'
12773 3' -60.7 NC_003387.1 + 19991 0.66 0.403726
Target:  5'- aAUCGCcgagGCCAC-CG-CGcCGUGCGCCGu -3'
miRNA:   3'- -UAGCG----CGGUGuGCaGC-GCGCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 20502 0.67 0.344295
Target:  5'- cGUCGCGCuCGCgcagcgcgGCGUCGCGCuCGUCGGu -3'
miRNA:   3'- -UAGCGCG-GUG--------UGCAGCGCGcGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.