miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 3' -60.7 NC_003387.1 + 135 0.66 0.421859
Target:  5'- gGUCGC-CCuCGCGaucCGCGC-CGCCGAg -3'
miRNA:   3'- -UAGCGcGGuGUGCa--GCGCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 2440 0.66 0.412731
Target:  5'- -gCGCaaCCGCAUGgaCGCGCGCcagGCCGAg -3'
miRNA:   3'- uaGCGc-GGUGUGCa-GCGCGCG---UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 3231 0.68 0.320822
Target:  5'- cGUCGaCGCCGgGCGg---GCGCACCGGc -3'
miRNA:   3'- -UAGC-GCGGUgUGCagcgCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 3266 0.68 0.336336
Target:  5'- -gUGCGCCcguuGC-CGUCuGUGCGUGCCGGg -3'
miRNA:   3'- uaGCGCGG----UGuGCAG-CGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 3560 0.67 0.352389
Target:  5'- -gCGCGaCCgccuGCGCGcUgGUGUGCACCGAc -3'
miRNA:   3'- uaGCGC-GG----UGUGC-AgCGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 3741 0.66 0.412731
Target:  5'- gAUCGacgGCCGCAUGccCGCGUGCACg-- -3'
miRNA:   3'- -UAGCg--CGGUGUGCa-GCGCGCGUGgcu -5'
12773 3' -60.7 NC_003387.1 + 3883 0.67 0.37747
Target:  5'- -gCGUGCaCGC-CGU-GCGuCGCGCCGAg -3'
miRNA:   3'- uaGCGCG-GUGuGCAgCGC-GCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 4559 0.68 0.328511
Target:  5'- -cUGCGCCuGCGCGacCGCGCGgGCCu- -3'
miRNA:   3'- uaGCGCGG-UGUGCa-GCGCGCgUGGcu -5'
12773 3' -60.7 NC_003387.1 + 4645 0.68 0.336336
Target:  5'- --aGCGCCACcCGUCGagGCGCuuCGGg -3'
miRNA:   3'- uagCGCGGUGuGCAGCg-CGCGugGCU- -5'
12773 3' -60.7 NC_003387.1 + 4779 0.66 0.421859
Target:  5'- uUCGCGgcCCACACGgCGuCGUGCccaugccugccGCCGAc -3'
miRNA:   3'- uAGCGC--GGUGUGCaGC-GCGCG-----------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 5636 0.68 0.320822
Target:  5'- -aCGCGCCgaGCAaGcCGagaaGCGCGCCGAg -3'
miRNA:   3'- uaGCGCGG--UGUgCaGCg---CGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 5713 0.66 0.412731
Target:  5'- -gCGUGCC-CGCGUCGuCGCugACCGGc -3'
miRNA:   3'- uaGCGCGGuGUGCAGC-GCGcgUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 5845 0.66 0.440473
Target:  5'- -cUGCGCCGCAgGUgGgG-GCGCCGc -3'
miRNA:   3'- uaGCGCGGUGUgCAgCgCgCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 6878 0.66 0.431107
Target:  5'- -aCGCcgGUCGC-CGUCGUG-GCACCGGc -3'
miRNA:   3'- uaGCG--CGGUGuGCAGCGCgCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 6998 0.68 0.298568
Target:  5'- --gGCGCCGCAgaaUGUCGCGCaGCAgcUCGGc -3'
miRNA:   3'- uagCGCGGUGU---GCAGCGCG-CGU--GGCU- -5'
12773 3' -60.7 NC_003387.1 + 7893 0.68 0.31252
Target:  5'- gGUCG-GCCGCAcuCGUgccCGCGCGCacgugugGCCGAa -3'
miRNA:   3'- -UAGCgCGGUGU--GCA---GCGCGCG-------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 8102 0.69 0.284407
Target:  5'- --aGgGCCACACGcUCGCGCcacgGC-CCGAc -3'
miRNA:   3'- uagCgCGGUGUGC-AGCGCG----CGuGGCU- -5'
12773 3' -60.7 NC_003387.1 + 8278 0.7 0.233057
Target:  5'- cUCGCGCaGCGCcUCGUGCGCGUCGGc -3'
miRNA:   3'- uAGCGCGgUGUGcAGCGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 9409 0.66 0.394846
Target:  5'- gAUCGCcgaggaguggGCCGacgagUACGaCGCGgGCGCCGAg -3'
miRNA:   3'- -UAGCG----------CGGU-----GUGCaGCGCgCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 9613 0.72 0.16639
Target:  5'- --gGCGCCGCGcCGUCGCGCucGUACCc- -3'
miRNA:   3'- uagCGCGGUGU-GCAGCGCG--CGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.