miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 3' -60.7 NC_003387.1 + 50246 0.66 0.440473
Target:  5'- --gGCGCCGUACGUCaGCGCcgggcgguGCACCu- -3'
miRNA:   3'- uagCGCGGUGUGCAG-CGCG--------CGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 23943 0.66 0.401049
Target:  5'- -gUGUGCCagucccaugcugcaGCACGU-GCGCaGCGCCGGg -3'
miRNA:   3'- uaGCGCGG--------------UGUGCAgCGCG-CGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 25527 0.66 0.394846
Target:  5'- cUUGCGCCGguUGCGcUCGCGC-CACCa- -3'
miRNA:   3'- uAGCGCGGU--GUGC-AGCGCGcGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 18760 0.66 0.394846
Target:  5'- -aUGCGCUuuGCGUCGCGUGUcgACUGc -3'
miRNA:   3'- uaGCGCGGugUGCAGCGCGCG--UGGCu -5'
12773 3' -60.7 NC_003387.1 + 9409 0.66 0.394846
Target:  5'- gAUCGCcgaggaguggGCCGacgagUACGaCGCGgGCGCCGAg -3'
miRNA:   3'- -UAGCG----------CGGU-----GUGCaGCGCgCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 37293 0.66 0.403726
Target:  5'- -gCGCGCUcgucgGCGCgGUCGuCGacCGCGCCGAc -3'
miRNA:   3'- uaGCGCGG-----UGUG-CAGC-GC--GCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 5713 0.66 0.412731
Target:  5'- -gCGUGCC-CGCGUCGuCGCugACCGGc -3'
miRNA:   3'- uaGCGCGGuGUGCAGC-GCGcgUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 2440 0.66 0.412731
Target:  5'- -gCGCaaCCGCAUGgaCGCGCGCcagGCCGAg -3'
miRNA:   3'- uaGCGc-GGUGUGCa-GCGCGCG---UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 18332 0.66 0.412731
Target:  5'- --gGCGUgGC-CGUCGUGCcCGCCGGu -3'
miRNA:   3'- uagCGCGgUGuGCAGCGCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 19991 0.66 0.403726
Target:  5'- aAUCGCcgagGCCAC-CG-CGcCGUGCGCCGu -3'
miRNA:   3'- -UAGCG----CGGUGuGCaGC-GCGCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 3741 0.66 0.412731
Target:  5'- gAUCGacgGCCGCAUGccCGCGUGCACg-- -3'
miRNA:   3'- -UAGCg--CGGUGUGCa-GCGCGCGUGgcu -5'
12773 3' -60.7 NC_003387.1 + 26175 0.66 0.412731
Target:  5'- --gGCGUCAUGuCGUCGCGUGCuuGCCu- -3'
miRNA:   3'- uagCGCGGUGU-GCAGCGCGCG--UGGcu -5'
12773 3' -60.7 NC_003387.1 + 22153 0.66 0.440473
Target:  5'- cUCGCGgCACG----GCGCGUACCGGc -3'
miRNA:   3'- uAGCGCgGUGUgcagCGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 5845 0.66 0.440473
Target:  5'- -cUGCGCCGCAgGUgGgG-GCGCCGc -3'
miRNA:   3'- uaGCGCGGUGUgCAgCgCgCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 48730 0.66 0.430177
Target:  5'- -gUGCGCCGCGacgaGUccaugacCGCGCGgguCGCCGAg -3'
miRNA:   3'- uaGCGCGGUGUg---CA-------GCGCGC---GUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 51426 0.66 0.421859
Target:  5'- cGUCGC-CCGCcaggGCGUCGagGCGCAUCa- -3'
miRNA:   3'- -UAGCGcGGUG----UGCAGCg-CGCGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 46448 0.66 0.421859
Target:  5'- gGUCGCGUCGuCgaugACGUUcuCGUGCACCGGg -3'
miRNA:   3'- -UAGCGCGGU-G----UGCAGc-GCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 37398 0.66 0.421859
Target:  5'- cUCGacgaGCCAguCGUCGcCGCGCagcacaaugucGCCGGu -3'
miRNA:   3'- uAGCg---CGGUguGCAGC-GCGCG-----------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 4779 0.66 0.421859
Target:  5'- uUCGCGgcCCACACGgCGuCGUGCccaugccugccGCCGAc -3'
miRNA:   3'- uAGCGC--GGUGUGCaGC-GCGCG-----------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 51802 0.66 0.416367
Target:  5'- cGUCGUGUUAgGCGUCuugauGCacagcgcgaacacgaGCGCGCCGAg -3'
miRNA:   3'- -UAGCGCGGUgUGCAG-----CG---------------CGCGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.