miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 3' -60.7 NC_003387.1 + 51975 1.06 0.000476
Target:  5'- cAUCGCGCCACACGUCGCGCGCACCGAc -3'
miRNA:   3'- -UAGCGCGGUGUGCAGCGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 13027 0.77 0.069409
Target:  5'- --aGCGcCCGCACGUCGCuGCGCaacGCCGAc -3'
miRNA:   3'- uagCGC-GGUGUGCAGCG-CGCG---UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 51521 0.77 0.075475
Target:  5'- --gGCGCCGCGuuCGUCGCGgGCACCa- -3'
miRNA:   3'- uagCGCGGUGU--GCAGCGCgCGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 23091 0.77 0.079799
Target:  5'- cUCGCGCCGuCGCG-CGUGCgguGCACCGAc -3'
miRNA:   3'- uAGCGCGGU-GUGCaGCGCG---CGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 44816 0.76 0.094232
Target:  5'- uUCG-GCCACACGUgCGCGCGgGCaCGAg -3'
miRNA:   3'- uAGCgCGGUGUGCA-GCGCGCgUG-GCU- -5'
12773 3' -60.7 NC_003387.1 + 26520 0.75 0.097939
Target:  5'- --aGCGCCGCACGUCGuCGCGCGagcgcagauccaaaaUCGAc -3'
miRNA:   3'- uagCGCGGUGUGCAGC-GCGCGU---------------GGCU- -5'
12773 3' -60.7 NC_003387.1 + 44275 0.75 0.112334
Target:  5'- -cCGCGCCGCGCgguggcucgccGugucucucgauuaccUCGCGCGCACCGGc -3'
miRNA:   3'- uaGCGCGGUGUG-----------C---------------AGCGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 18433 0.74 0.120581
Target:  5'- cUCGggcaGCCACGUGUaCGCGCGCACCGu -3'
miRNA:   3'- uAGCg---CGGUGUGCA-GCGCGCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 24267 0.73 0.13329
Target:  5'- -cUGCGCCGCGaucugccgccgccuCGgCGUGCGCGCCGAu -3'
miRNA:   3'- uaGCGCGGUGU--------------GCaGCGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 48705 0.73 0.138042
Target:  5'- cUCGCGCUugGCGUUGuCGaGCACCGu -3'
miRNA:   3'- uAGCGCGGugUGCAGC-GCgCGUGGCu -5'
12773 3' -60.7 NC_003387.1 + 24383 0.73 0.149604
Target:  5'- uUCGCGCCG-ACGUacaGCgGCGCAUCGAc -3'
miRNA:   3'- uAGCGCGGUgUGCAg--CG-CGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 31456 0.72 0.163769
Target:  5'- -gUGCGCCACcuugcccgacuccuCGUCGCgGCGCACCa- -3'
miRNA:   3'- uaGCGCGGUGu-------------GCAGCG-CGCGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 9613 0.72 0.16639
Target:  5'- --gGCGCCGCGcCGUCGCGCucGUACCc- -3'
miRNA:   3'- uagCGCGGUGU-GCAGCGCG--CGUGGcu -5'
12773 3' -60.7 NC_003387.1 + 36853 0.72 0.170843
Target:  5'- cUCGggcaGCCACAUGUaCGCGCGCACg-- -3'
miRNA:   3'- uAGCg---CGGUGUGCA-GCGCGCGUGgcu -5'
12773 3' -60.7 NC_003387.1 + 19119 0.72 0.172654
Target:  5'- gGUCGUGCCACAccucggcgggaucuuCGUCGCGCacGCgcucagcaagGCCGAa -3'
miRNA:   3'- -UAGCGCGGUGU---------------GCAGCGCG--CG----------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 47593 0.72 0.175402
Target:  5'- --aGCGCCcCuCGUCGCGUGCGgCGAu -3'
miRNA:   3'- uagCGCGGuGuGCAGCGCGCGUgGCU- -5'
12773 3' -60.7 NC_003387.1 + 43893 0.72 0.175402
Target:  5'- gAUCGCGa-ACuuGUCGCGCacGCACCGAu -3'
miRNA:   3'- -UAGCGCggUGugCAGCGCG--CGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 21522 0.71 0.191721
Target:  5'- -aCGCGauucaggCGCGCGUCGCGUucgacgugccgcccgGCACCGAg -3'
miRNA:   3'- uaGCGCg------GUGUGCAGCGCG---------------CGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 22514 0.71 0.205086
Target:  5'- -gCGCGCUcgACGUCG-GCGUACCGGc -3'
miRNA:   3'- uaGCGCGGugUGCAGCgCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 18600 0.71 0.205086
Target:  5'- uUCGCGCacCGCgACGUCGaCGC-CGCCGAu -3'
miRNA:   3'- uAGCGCG--GUG-UGCAGC-GCGcGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.