miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 3' -60.7 NC_003387.1 + 13027 0.77 0.069409
Target:  5'- --aGCGcCCGCACGUCGCuGCGCaacGCCGAc -3'
miRNA:   3'- uagCGC-GGUGUGCAGCG-CGCG---UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 33183 0.68 0.298568
Target:  5'- gAUCGcCGCCGCAUGcggaUCGCGCaGCGCa-- -3'
miRNA:   3'- -UAGC-GCGGUGUGC----AGCGCG-CGUGgcu -5'
12773 3' -60.7 NC_003387.1 + 41113 0.68 0.313268
Target:  5'- cUgGCGCUGCACGaccggaucaagUgGCaGCGCGCCGAc -3'
miRNA:   3'- uAgCGCGGUGUGC-----------AgCG-CGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 48131 0.66 0.440473
Target:  5'- -aCGUGgcagacCCGCGCGcagCGCGC-CACCGAg -3'
miRNA:   3'- uaGCGC------GGUGUGCa--GCGCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 18600 0.71 0.205086
Target:  5'- uUCGCGCacCGCgACGUCGaCGC-CGCCGAu -3'
miRNA:   3'- uAGCGCG--GUG-UGCAGC-GCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 33446 0.71 0.215908
Target:  5'- -gCGCGCCAcCACcUCGCGCaagGCgGCCGAa -3'
miRNA:   3'- uaGCGCGGU-GUGcAGCGCG---CG-UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 15785 0.7 0.233057
Target:  5'- aGUCGCGCUuuagcgugauCAUGUCGCGCuGgGCUGAc -3'
miRNA:   3'- -UAGCGCGGu---------GUGCAGCGCG-CgUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 31185 0.7 0.250709
Target:  5'- -cCGgGCgGCACGUCGaacgcgaCGCGCGCCuGAa -3'
miRNA:   3'- uaGCgCGgUGUGCAGC-------GCGCGUGG-CU- -5'
12773 3' -60.7 NC_003387.1 + 40839 0.69 0.264169
Target:  5'- --gGCGCCgaucguGCGCGaCGCGCuCACCGAc -3'
miRNA:   3'- uagCGCGG------UGUGCaGCGCGcGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 32224 0.68 0.298568
Target:  5'- -cCGCGCUGCGCGagCGCGacgaGCugGCCGAc -3'
miRNA:   3'- uaGCGCGGUGUGCa-GCGCg---CG--UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 26695 0.69 0.270782
Target:  5'- cUCGCGCUgcucgucgACGcCGUCGUGCGCGgCGc -3'
miRNA:   3'- uAGCGCGG--------UGU-GCAGCGCGCGUgGCu -5'
12773 3' -60.7 NC_003387.1 + 48549 0.7 0.251337
Target:  5'- -cCGCGCCGagguCACGUgccagGCGUGCAUCGAc -3'
miRNA:   3'- uaGCGCGGU----GUGCAg----CGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 44275 0.75 0.112334
Target:  5'- -cCGCGCCGCGCgguggcucgccGugucucucgauuaccUCGCGCGCACCGGc -3'
miRNA:   3'- uaGCGCGGUGUG-----------C---------------AGCGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 34273 0.69 0.284407
Target:  5'- aGUCGgGCguCACGgugCGCGCGUACaCGu -3'
miRNA:   3'- -UAGCgCGguGUGCa--GCGCGCGUG-GCu -5'
12773 3' -60.7 NC_003387.1 + 24267 0.73 0.13329
Target:  5'- -cUGCGCCGCGaucugccgccgccuCGgCGUGCGCGCCGAu -3'
miRNA:   3'- uaGCGCGGUGU--------------GCaGCGCGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 43393 0.7 0.251337
Target:  5'- --gGCGCCcgGCugGUCGUGUGCucggaggucaacGCCGAc -3'
miRNA:   3'- uagCGCGG--UGugCAGCGCGCG------------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 47560 0.69 0.284407
Target:  5'- cGUCG-GCCGCAC-UCGCGUGUcggugaagcucgACCGAu -3'
miRNA:   3'- -UAGCgCGGUGUGcAGCGCGCG------------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 7893 0.68 0.31252
Target:  5'- gGUCG-GCCGCAcuCGUgccCGCGCGCacgugugGCCGAa -3'
miRNA:   3'- -UAGCgCGGUGU--GCA---GCGCGCG-------UGGCU- -5'
12773 3' -60.7 NC_003387.1 + 24383 0.73 0.149604
Target:  5'- uUCGCGCCG-ACGUacaGCgGCGCAUCGAc -3'
miRNA:   3'- uAGCGCGGUgUGCAg--CG-CGCGUGGCU- -5'
12773 3' -60.7 NC_003387.1 + 33054 0.7 0.227217
Target:  5'- -cCGUGCCGCACcggGUGCGCGCCa- -3'
miRNA:   3'- uaGCGCGGUGUGcagCGCGCGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.