Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 31018 | 0.67 | 0.53059 |
Target: 5'- gGUCGGCGCGGgccgcgcucGCCgagGCGGC-CAGg -3' miRNA: 3'- gCAGCUGUGCUa--------CGGaa-CGCCGcGUU- -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 9565 | 0.67 | 0.53059 |
Target: 5'- -aUCGACuuguCGccGCCgaacgUGCGGUGCAGg -3' miRNA: 3'- gcAGCUGu---GCuaCGGa----ACGCCGCGUU- -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 21682 | 0.67 | 0.529525 |
Target: 5'- -aUCGGCGcCGGUGCCgUGCuggccgccgccccGGCGCAc -3' miRNA: 3'- gcAGCUGU-GCUACGGaACG-------------CCGCGUu -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 24958 | 0.67 | 0.519974 |
Target: 5'- aG-CGACACGAggGCCUccGCGGUGguGu -3' miRNA: 3'- gCaGCUGUGCUa-CGGAa-CGCCGCguU- -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 22678 | 0.68 | 0.509442 |
Target: 5'- gCGcUCGugGgCGGUGUCgacgGCGGCGCu- -3' miRNA: 3'- -GC-AGCugU-GCUACGGaa--CGCCGCGuu -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 28440 | 0.68 | 0.499001 |
Target: 5'- -aUCGGCGCGcacGCCgagGCGGCgGCAGa -3' miRNA: 3'- gcAGCUGUGCua-CGGaa-CGCCG-CGUU- -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 6796 | 0.68 | 0.468277 |
Target: 5'- gCG-CGACAUGGUcGCCcUGCGGCuCAAg -3' miRNA: 3'- -GCaGCUGUGCUA-CGGaACGCCGcGUU- -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 25306 | 0.68 | 0.468277 |
Target: 5'- aCGUCGGCGCGGuggUGCCa-GCGcGCGUc- -3' miRNA: 3'- -GCAGCUGUGCU---ACGGaaCGC-CGCGuu -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 48759 | 0.68 | 0.468277 |
Target: 5'- gGUCG-C-CGA-GCCUUGCaGCGCGAc -3' miRNA: 3'- gCAGCuGuGCUaCGGAACGcCGCGUU- -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 48464 | 0.68 | 0.468277 |
Target: 5'- aCGUCGACcCGcUGUCgcagacguugUGCGGCGCc- -3' miRNA: 3'- -GCAGCUGuGCuACGGa---------ACGCCGCGuu -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 31445 | 0.68 | 0.462248 |
Target: 5'- aCGaCGACGCGGUGCgccacCUUgcccgacuccucgucGCGGCGCAc -3' miRNA: 3'- -GCaGCUGUGCUACG-----GAA---------------CGCCGCGUu -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 31961 | 0.68 | 0.458252 |
Target: 5'- gGcCGACGC---GCCUUGCaGGCGCAu -3' miRNA: 3'- gCaGCUGUGcuaCGGAACG-CCGCGUu -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 15837 | 0.69 | 0.448343 |
Target: 5'- aCGcCGACGCGGUGCCcguCGGCGa-- -3' miRNA: 3'- -GCaGCUGUGCUACGGaacGCCGCguu -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 16686 | 0.69 | 0.438554 |
Target: 5'- -aUCGAgGCGGuUGCucuugauccgCUUGCGGCGCAc -3' miRNA: 3'- gcAGCUgUGCU-ACG----------GAACGCCGCGUu -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 1195 | 0.69 | 0.438554 |
Target: 5'- --aCGACAUGGUGCCcgcgacgaacGCGGCGCc- -3' miRNA: 3'- gcaGCUGUGCUACGGaa--------CGCCGCGuu -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 28333 | 0.69 | 0.428888 |
Target: 5'- gCGUCGAUGCGccGCUguacGuCGGCGCGAa -3' miRNA: 3'- -GCAGCUGUGCuaCGGaa--C-GCCGCGUU- -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 14868 | 0.69 | 0.419349 |
Target: 5'- uCGUCGAgGCGA-GCCgccgGGCGCAGg -3' miRNA: 3'- -GCAGCUgUGCUaCGGaacgCCGCGUU- -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 16770 | 0.69 | 0.409939 |
Target: 5'- -cUCGAC-CGcgGCCUUcGCGGCGUc- -3' miRNA: 3'- gcAGCUGuGCuaCGGAA-CGCCGCGuu -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 728 | 0.7 | 0.39152 |
Target: 5'- uGUCGACGgccuggccguCGGUGCgCgcgacgUGUGGCGCGAu -3' miRNA: 3'- gCAGCUGU----------GCUACG-Ga-----ACGCCGCGUU- -5' |
|||||||
12773 | 5' | -56.6 | NC_003387.1 | + | 44039 | 0.7 | 0.364924 |
Target: 5'- gGUCGGCAgCGGcgUGCCgaaCGGCGCAu -3' miRNA: 3'- gCAGCUGU-GCU--ACGGaacGCCGCGUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home