miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 5' -56.6 NC_003387.1 + 21923 0.66 0.573764
Target:  5'- -aUCGACAuugUGGUGCUcgGCGGCGgGGg -3'
miRNA:   3'- gcAGCUGU---GCUACGGaaCGCCGCgUU- -5'
12773 5' -56.6 NC_003387.1 + 22487 0.72 0.292861
Target:  5'- gCGUCGuACcggGCGAcgGCCUcgGCGGCGCGc -3'
miRNA:   3'- -GCAGC-UG---UGCUa-CGGAa-CGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 22678 0.68 0.509442
Target:  5'- gCGcUCGugGgCGGUGUCgacgGCGGCGCu- -3'
miRNA:   3'- -GC-AGCugU-GCUACGGaa--CGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 23893 0.66 0.573764
Target:  5'- aCGUCGgcgagcACACGAUcGUCUUgGUGGCGUg- -3'
miRNA:   3'- -GCAGC------UGUGCUA-CGGAA-CGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 24958 0.67 0.519974
Target:  5'- aG-CGACACGAggGCCUccGCGGUGguGu -3'
miRNA:   3'- gCaGCUGUGCUa-CGGAa-CGCCGCguU- -5'
12773 5' -56.6 NC_003387.1 + 25306 0.68 0.468277
Target:  5'- aCGUCGGCGCGGuggUGCCa-GCGcGCGUc- -3'
miRNA:   3'- -GCAGCUGUGCU---ACGGaaCGC-CGCGuu -5'
12773 5' -56.6 NC_003387.1 + 25420 0.66 0.606674
Target:  5'- aCGgCGACGCGGcucucaaggGCCgccagUGCGGCGUu- -3'
miRNA:   3'- -GCaGCUGUGCUa--------CGGa----ACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 26556 0.66 0.573764
Target:  5'- gCGaCGACAUGAcGcCCUUGCGG-GCGGu -3'
miRNA:   3'- -GCaGCUGUGCUaC-GGAACGCCgCGUU- -5'
12773 5' -56.6 NC_003387.1 + 26705 0.7 0.35634
Target:  5'- uCGUCGACGCcgucGUGC---GCGGCGCGAg -3'
miRNA:   3'- -GCAGCUGUGc---UACGgaaCGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 27902 0.66 0.62874
Target:  5'- aG-CGcACACGcgGCCUUgaccgGCGGCGUGGg -3'
miRNA:   3'- gCaGC-UGUGCuaCGGAA-----CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 27970 0.73 0.257872
Target:  5'- -cUCGGCuuggcCGGUGCCgUUGCGGCGCc- -3'
miRNA:   3'- gcAGCUGu----GCUACGG-AACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 28333 0.69 0.428888
Target:  5'- gCGUCGAUGCGccGCUguacGuCGGCGCGAa -3'
miRNA:   3'- -GCAGCUGUGCuaCGGaa--C-GCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 28440 0.68 0.499001
Target:  5'- -aUCGGCGCGcacGCCgagGCGGCgGCAGa -3'
miRNA:   3'- gcAGCUGUGCua-CGGaa-CGCCG-CGUU- -5'
12773 5' -56.6 NC_003387.1 + 29688 0.67 0.541285
Target:  5'- aCGUCGACGuggccgagguCGAggcGCUcgGCGGCGCc- -3'
miRNA:   3'- -GCAGCUGU----------GCUa--CGGaaCGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 31018 0.67 0.53059
Target:  5'- gGUCGGCGCGGgccgcgcucGCCgagGCGGC-CAGg -3'
miRNA:   3'- gCAGCUGUGCUa--------CGGaa-CGCCGcGUU- -5'
12773 5' -56.6 NC_003387.1 + 31445 0.68 0.462248
Target:  5'- aCGaCGACGCGGUGCgccacCUUgcccgacuccucgucGCGGCGCAc -3'
miRNA:   3'- -GCaGCUGUGCUACG-----GAA---------------CGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 31961 0.68 0.458252
Target:  5'- gGcCGACGC---GCCUUGCaGGCGCAu -3'
miRNA:   3'- gCaGCUGUGcuaCGGAACG-CCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 32832 0.67 0.556374
Target:  5'- aCGUCcuggcucaggcccaGCACGGUGUCUUGCagGGCGCc- -3'
miRNA:   3'- -GCAGc-------------UGUGCUACGGAACG--CCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 34837 0.71 0.314801
Target:  5'- uCGUCGACggcccgcGCGG-GCCUUGCGGUgagaGCAGc -3'
miRNA:   3'- -GCAGCUG-------UGCUaCGGAACGCCG----CGUU- -5'
12773 5' -56.6 NC_003387.1 + 35839 0.66 0.62874
Target:  5'- gCGUCGGCuauguCGugcaucGCCUgggcgUGCGGCGCc- -3'
miRNA:   3'- -GCAGCUGu----GCua----CGGA-----ACGCCGCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.