miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 5' -56.6 NC_003387.1 + 728 0.7 0.39152
Target:  5'- uGUCGACGgccuggccguCGGUGCgCgcgacgUGUGGCGCGAu -3'
miRNA:   3'- gCAGCUGU----------GCUACG-Ga-----ACGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 1195 0.69 0.438554
Target:  5'- --aCGACAUGGUGCCcgcgacgaacGCGGCGCc- -3'
miRNA:   3'- gcaGCUGUGCUACGGaa--------CGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 1249 0.67 0.541285
Target:  5'- gGUCuGGCguucGCGGUGUCgguUGCGGUGCGg -3'
miRNA:   3'- gCAG-CUG----UGCUACGGa--ACGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 1595 0.66 0.584697
Target:  5'- gGUCGACAUGucgcacgGCCUggcgauuucgGuCGGCGCGu -3'
miRNA:   3'- gCAGCUGUGCua-----CGGAa---------C-GCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 1703 0.78 0.104841
Target:  5'- gGUCGACugGAUcgcugagcggGCCggGCGGCGCAu -3'
miRNA:   3'- gCAGCUGugCUA----------CGGaaCGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 3821 0.66 0.59567
Target:  5'- gCG-CGACaACGAUcGUCaggGCGGCGCGGu -3'
miRNA:   3'- -GCaGCUG-UGCUA-CGGaa-CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 4140 0.66 0.584697
Target:  5'- gCGUUcACACGAucacugcgugUGCCUgGCGGUGCc- -3'
miRNA:   3'- -GCAGcUGUGCU----------ACGGAaCGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 6796 0.68 0.468277
Target:  5'- gCG-CGACAUGGUcGCCcUGCGGCuCAAg -3'
miRNA:   3'- -GCaGCUGUGCUA-CGGaACGCCGcGUU- -5'
12773 5' -56.6 NC_003387.1 + 9565 0.67 0.53059
Target:  5'- -aUCGACuuguCGccGCCgaacgUGCGGUGCAGg -3'
miRNA:   3'- gcAGCUGu---GCuaCGGa----ACGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 11593 0.67 0.556374
Target:  5'- cCGUCGGCGCGcUGCCacuugauccggucgUGCaGCGCc- -3'
miRNA:   3'- -GCAGCUGUGCuACGGa-------------ACGcCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 12016 0.72 0.292861
Target:  5'- gGUCGACACGgcGCa-UGCGGUGUg- -3'
miRNA:   3'- gCAGCUGUGCuaCGgaACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 13691 0.74 0.220483
Target:  5'- uGUCGGCguucgucccgaGCGcgGCCcagGCGGCGCAGg -3'
miRNA:   3'- gCAGCUG-----------UGCuaCGGaa-CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 14699 0.74 0.226377
Target:  5'- cCGUCGcCGCGAU-CCgUUGCGGUGCAc -3'
miRNA:   3'- -GCAGCuGUGCUAcGG-AACGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 14868 0.69 0.419349
Target:  5'- uCGUCGAgGCGA-GCCgccgGGCGCAGg -3'
miRNA:   3'- -GCAGCUgUGCUaCGGaacgCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 15837 0.69 0.448343
Target:  5'- aCGcCGACGCGGUGCCcguCGGCGa-- -3'
miRNA:   3'- -GCaGCUGUGCUACGGaacGCCGCguu -5'
12773 5' -56.6 NC_003387.1 + 16686 0.69 0.438554
Target:  5'- -aUCGAgGCGGuUGCucuugauccgCUUGCGGCGCAc -3'
miRNA:   3'- gcAGCUgUGCU-ACG----------GAACGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 16770 0.69 0.409939
Target:  5'- -cUCGAC-CGcgGCCUUcGCGGCGUc- -3'
miRNA:   3'- gcAGCUGuGCuaCGGAA-CGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 21245 0.67 0.545582
Target:  5'- gGUCGGCAUGGUGCgccgcgacgaggaguCgggcaagGUGGCGCAc -3'
miRNA:   3'- gCAGCUGUGCUACG---------------Gaa-----CGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 21682 0.67 0.529525
Target:  5'- -aUCGGCGcCGGUGCCgUGCuggccgccgccccGGCGCAc -3'
miRNA:   3'- gcAGCUGU-GCUACGGaACG-------------CCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 21751 0.66 0.583602
Target:  5'- uG-CGACACGGUGCUguggggaUUccugggcagccaGCGGCGCAc -3'
miRNA:   3'- gCaGCUGUGCUACGG-------AA------------CGCCGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.