miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 5' -56.6 NC_003387.1 + 52010 1.06 0.001024
Target:  5'- cCGUCGACACGAUGCCUUGCGGCGCAAu -3'
miRNA:   3'- -GCAGCUGUGCUACGGAACGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 48759 0.67 0.562879
Target:  5'- aCGUCacgcACGCGGUGCU---CGGCGCAGc -3'
miRNA:   3'- -GCAGc---UGUGCUACGGaacGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 48759 0.68 0.468277
Target:  5'- gGUCG-C-CGA-GCCUUGCaGCGCGAc -3'
miRNA:   3'- gCAGCuGuGCUaCGGAACGcCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 48464 0.68 0.468277
Target:  5'- aCGUCGACcCGcUGUCgcagacguugUGCGGCGCc- -3'
miRNA:   3'- -GCAGCUGuGCuACGGa---------ACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 48273 0.66 0.584697
Target:  5'- gGUCGGCuCG--GCCUU-CGGCGCGGg -3'
miRNA:   3'- gCAGCUGuGCuaCGGAAcGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 46281 0.7 0.364924
Target:  5'- -aUUGACACGugggagGCCgagcagGCGGCGCAGc -3'
miRNA:   3'- gcAGCUGUGCua----CGGaa----CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 46009 0.66 0.59567
Target:  5'- aGUCGACgguGAacUGCCc-GCGGUGCAAg -3'
miRNA:   3'- gCAGCUGug-CU--ACGGaaCGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 45169 0.66 0.584697
Target:  5'- aGUgaUGACGCGAUcgGCCaggGCGGCaGCAGu -3'
miRNA:   3'- gCA--GCUGUGCUA--CGGaa-CGCCG-CGUU- -5'
12773 5' -56.6 NC_003387.1 + 44602 0.66 0.59567
Target:  5'- aGUCGA-GCGAcGCCgucgggccGUGGCGCGAg -3'
miRNA:   3'- gCAGCUgUGCUaCGGaa------CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 44039 0.7 0.364924
Target:  5'- gGUCGGCAgCGGcgUGCCgaaCGGCGCAu -3'
miRNA:   3'- gCAGCUGU-GCU--ACGGaacGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 36344 0.71 0.339602
Target:  5'- uCGUCGACuGCGAaacgacggGCCUgcaUGaCGGCGCAGc -3'
miRNA:   3'- -GCAGCUG-UGCUa-------CGGA---AC-GCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 35839 0.66 0.62874
Target:  5'- gCGUCGGCuauguCGugcaucGCCUgggcgUGCGGCGCc- -3'
miRNA:   3'- -GCAGCUGu----GCua----CGGA-----ACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 34837 0.71 0.314801
Target:  5'- uCGUCGACggcccgcGCGG-GCCUUGCGGUgagaGCAGc -3'
miRNA:   3'- -GCAGCUG-------UGCUaCGGAACGCCG----CGUU- -5'
12773 5' -56.6 NC_003387.1 + 32832 0.67 0.556374
Target:  5'- aCGUCcuggcucaggcccaGCACGGUGUCUUGCagGGCGCc- -3'
miRNA:   3'- -GCAGc-------------UGUGCUACGGAACG--CCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 31961 0.68 0.458252
Target:  5'- gGcCGACGC---GCCUUGCaGGCGCAu -3'
miRNA:   3'- gCaGCUGUGcuaCGGAACG-CCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 31445 0.68 0.462248
Target:  5'- aCGaCGACGCGGUGCgccacCUUgcccgacuccucgucGCGGCGCAc -3'
miRNA:   3'- -GCaGCUGUGCUACG-----GAA---------------CGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 31018 0.67 0.53059
Target:  5'- gGUCGGCGCGGgccgcgcucGCCgagGCGGC-CAGg -3'
miRNA:   3'- gCAGCUGUGCUa--------CGGaa-CGCCGcGUU- -5'
12773 5' -56.6 NC_003387.1 + 29688 0.67 0.541285
Target:  5'- aCGUCGACGuggccgagguCGAggcGCUcgGCGGCGCc- -3'
miRNA:   3'- -GCAGCUGU----------GCUa--CGGaaCGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 28440 0.68 0.499001
Target:  5'- -aUCGGCGCGcacGCCgagGCGGCgGCAGa -3'
miRNA:   3'- gcAGCUGUGCua-CGGaa-CGCCG-CGUU- -5'
12773 5' -56.6 NC_003387.1 + 28333 0.69 0.428888
Target:  5'- gCGUCGAUGCGccGCUguacGuCGGCGCGAa -3'
miRNA:   3'- -GCAGCUGUGCuaCGGaa--C-GCCGCGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.