miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 5' -56.6 NC_003387.1 + 52010 1.06 0.001024
Target:  5'- cCGUCGACACGAUGCCUUGCGGCGCAAu -3'
miRNA:   3'- -GCAGCUGUGCUACGGAACGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 1703 0.78 0.104841
Target:  5'- gGUCGACugGAUcgcugagcggGCCggGCGGCGCAu -3'
miRNA:   3'- gCAGCUGugCUA----------CGGaaCGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 13691 0.74 0.220483
Target:  5'- uGUCGGCguucgucccgaGCGcgGCCcagGCGGCGCAGg -3'
miRNA:   3'- gCAGCUG-----------UGCuaCGGaa-CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 14699 0.74 0.226377
Target:  5'- cCGUCGcCGCGAU-CCgUUGCGGUGCAc -3'
miRNA:   3'- -GCAGCuGUGCUAcGG-AACGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 27970 0.73 0.257872
Target:  5'- -cUCGGCuuggcCGGUGCCgUUGCGGCGCc- -3'
miRNA:   3'- gcAGCUGu----GCUACGG-AACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 22487 0.72 0.292861
Target:  5'- gCGUCGuACcggGCGAcgGCCUcgGCGGCGCGc -3'
miRNA:   3'- -GCAGC-UG---UGCUa-CGGAa-CGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 12016 0.72 0.292861
Target:  5'- gGUCGACACGgcGCa-UGCGGUGUg- -3'
miRNA:   3'- gCAGCUGUGCuaCGgaACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 34837 0.71 0.314801
Target:  5'- uCGUCGACggcccgcGCGG-GCCUUGCGGUgagaGCAGc -3'
miRNA:   3'- -GCAGCUG-------UGCUaCGGAACGCCG----CGUU- -5'
12773 5' -56.6 NC_003387.1 + 36344 0.71 0.339602
Target:  5'- uCGUCGACuGCGAaacgacggGCCUgcaUGaCGGCGCAGc -3'
miRNA:   3'- -GCAGCUG-UGCUa-------CGGA---AC-GCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 26705 0.7 0.35634
Target:  5'- uCGUCGACGCcgucGUGC---GCGGCGCGAg -3'
miRNA:   3'- -GCAGCUGUGc---UACGgaaCGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 44039 0.7 0.364924
Target:  5'- gGUCGGCAgCGGcgUGCCgaaCGGCGCAu -3'
miRNA:   3'- gCAGCUGU-GCU--ACGGaacGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 46281 0.7 0.364924
Target:  5'- -aUUGACACGugggagGCCgagcagGCGGCGCAGc -3'
miRNA:   3'- gcAGCUGUGCua----CGGaa----CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 728 0.7 0.39152
Target:  5'- uGUCGACGgccuggccguCGGUGCgCgcgacgUGUGGCGCGAu -3'
miRNA:   3'- gCAGCUGU----------GCUACG-Ga-----ACGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 16770 0.69 0.409939
Target:  5'- -cUCGAC-CGcgGCCUUcGCGGCGUc- -3'
miRNA:   3'- gcAGCUGuGCuaCGGAA-CGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 14868 0.69 0.419349
Target:  5'- uCGUCGAgGCGA-GCCgccgGGCGCAGg -3'
miRNA:   3'- -GCAGCUgUGCUaCGGaacgCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 28333 0.69 0.428888
Target:  5'- gCGUCGAUGCGccGCUguacGuCGGCGCGAa -3'
miRNA:   3'- -GCAGCUGUGCuaCGGaa--C-GCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 16686 0.69 0.438554
Target:  5'- -aUCGAgGCGGuUGCucuugauccgCUUGCGGCGCAc -3'
miRNA:   3'- gcAGCUgUGCU-ACG----------GAACGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 1195 0.69 0.438554
Target:  5'- --aCGACAUGGUGCCcgcgacgaacGCGGCGCc- -3'
miRNA:   3'- gcaGCUGUGCUACGGaa--------CGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 15837 0.69 0.448343
Target:  5'- aCGcCGACGCGGUGCCcguCGGCGa-- -3'
miRNA:   3'- -GCaGCUGUGCUACGGaacGCCGCguu -5'
12773 5' -56.6 NC_003387.1 + 31961 0.68 0.458252
Target:  5'- gGcCGACGC---GCCUUGCaGGCGCAu -3'
miRNA:   3'- gCaGCUGUGcuaCGGAACG-CCGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.