miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 5' -56.6 NC_003387.1 + 1703 0.78 0.104841
Target:  5'- gGUCGACugGAUcgcugagcggGCCggGCGGCGCAu -3'
miRNA:   3'- gCAGCUGugCUA----------CGGaaCGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 21245 0.67 0.545582
Target:  5'- gGUCGGCAUGGUGCgccgcgacgaggaguCgggcaagGUGGCGCAc -3'
miRNA:   3'- gCAGCUGUGCUACG---------------Gaa-----CGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 6796 0.68 0.468277
Target:  5'- gCG-CGACAUGGUcGCCcUGCGGCuCAAg -3'
miRNA:   3'- -GCaGCUGUGCUA-CGGaACGCCGcGUU- -5'
12773 5' -56.6 NC_003387.1 + 1195 0.69 0.438554
Target:  5'- --aCGACAUGGUGCCcgcgacgaacGCGGCGCc- -3'
miRNA:   3'- gcaGCUGUGCUACGGaa--------CGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 46281 0.7 0.364924
Target:  5'- -aUUGACACGugggagGCCgagcagGCGGCGCAGc -3'
miRNA:   3'- gcAGCUGUGCua----CGGaa----CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 26705 0.7 0.35634
Target:  5'- uCGUCGACGCcgucGUGC---GCGGCGCGAg -3'
miRNA:   3'- -GCAGCUGUGc---UACGgaaCGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 44602 0.66 0.59567
Target:  5'- aGUCGA-GCGAcGCCgucgggccGUGGCGCGAg -3'
miRNA:   3'- gCAGCUgUGCUaCGGaa------CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 1595 0.66 0.584697
Target:  5'- gGUCGACAUGucgcacgGCCUggcgauuucgGuCGGCGCGu -3'
miRNA:   3'- gCAGCUGUGCua-----CGGAa---------C-GCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 26556 0.66 0.573764
Target:  5'- gCGaCGACAUGAcGcCCUUGCGG-GCGGu -3'
miRNA:   3'- -GCaGCUGUGCUaC-GGAACGCCgCGUU- -5'
12773 5' -56.6 NC_003387.1 + 29688 0.67 0.541285
Target:  5'- aCGUCGACGuggccgagguCGAggcGCUcgGCGGCGCc- -3'
miRNA:   3'- -GCAGCUGU----------GCUa--CGGaaCGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 728 0.7 0.39152
Target:  5'- uGUCGACGgccuggccguCGGUGCgCgcgacgUGUGGCGCGAu -3'
miRNA:   3'- gCAGCUGU----------GCUACG-Ga-----ACGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 13691 0.74 0.220483
Target:  5'- uGUCGGCguucgucccgaGCGcgGCCcagGCGGCGCAGg -3'
miRNA:   3'- gCAGCUG-----------UGCuaCGGaa-CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 21923 0.66 0.573764
Target:  5'- -aUCGACAuugUGGUGCUcgGCGGCGgGGg -3'
miRNA:   3'- gcAGCUGU---GCUACGGaaCGCCGCgUU- -5'
12773 5' -56.6 NC_003387.1 + 12016 0.72 0.292861
Target:  5'- gGUCGACACGgcGCa-UGCGGUGUg- -3'
miRNA:   3'- gCAGCUGUGCuaCGgaACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 48464 0.68 0.468277
Target:  5'- aCGUCGACcCGcUGUCgcagacguugUGCGGCGCc- -3'
miRNA:   3'- -GCAGCUGuGCuACGGa---------ACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 4140 0.66 0.584697
Target:  5'- gCGUUcACACGAucacugcgugUGCCUgGCGGUGCc- -3'
miRNA:   3'- -GCAGcUGUGCU----------ACGGAaCGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 46009 0.66 0.59567
Target:  5'- aGUCGACgguGAacUGCCc-GCGGUGCAAg -3'
miRNA:   3'- gCAGCUGug-CU--ACGGaaCGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 36344 0.71 0.339602
Target:  5'- uCGUCGACuGCGAaacgacggGCCUgcaUGaCGGCGCAGc -3'
miRNA:   3'- -GCAGCUG-UGCUa-------CGGA---AC-GCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 48759 0.67 0.562879
Target:  5'- aCGUCacgcACGCGGUGCU---CGGCGCAGc -3'
miRNA:   3'- -GCAGc---UGUGCUACGGaacGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 24958 0.67 0.519974
Target:  5'- aG-CGACACGAggGCCUccGCGGUGguGu -3'
miRNA:   3'- gCaGCUGUGCUa-CGGAa-CGCCGCguU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.