miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12773 5' -56.6 NC_003387.1 + 31961 0.68 0.458252
Target:  5'- gGcCGACGC---GCCUUGCaGGCGCAu -3'
miRNA:   3'- gCaGCUGUGcuaCGGAACG-CCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 31018 0.67 0.53059
Target:  5'- gGUCGGCGCGGgccgcgcucGCCgagGCGGC-CAGg -3'
miRNA:   3'- gCAGCUGUGCUa--------CGGaa-CGCCGcGUU- -5'
12773 5' -56.6 NC_003387.1 + 21682 0.67 0.529525
Target:  5'- -aUCGGCGcCGGUGCCgUGCuggccgccgccccGGCGCAc -3'
miRNA:   3'- gcAGCUGU-GCUACGGaACG-------------CCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 24958 0.67 0.519974
Target:  5'- aG-CGACACGAggGCCUccGCGGUGguGu -3'
miRNA:   3'- gCaGCUGUGCUa-CGGAa-CGCCGCguU- -5'
12773 5' -56.6 NC_003387.1 + 22678 0.68 0.509442
Target:  5'- gCGcUCGugGgCGGUGUCgacgGCGGCGCu- -3'
miRNA:   3'- -GC-AGCugU-GCUACGGaa--CGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 28440 0.68 0.499001
Target:  5'- -aUCGGCGCGcacGCCgagGCGGCgGCAGa -3'
miRNA:   3'- gcAGCUGUGCua-CGGaa-CGCCG-CGUU- -5'
12773 5' -56.6 NC_003387.1 + 25306 0.68 0.468277
Target:  5'- aCGUCGGCGCGGuggUGCCa-GCGcGCGUc- -3'
miRNA:   3'- -GCAGCUGUGCU---ACGGaaCGC-CGCGuu -5'
12773 5' -56.6 NC_003387.1 + 48759 0.68 0.468277
Target:  5'- gGUCG-C-CGA-GCCUUGCaGCGCGAc -3'
miRNA:   3'- gCAGCuGuGCUaCGGAACGcCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 31445 0.68 0.462248
Target:  5'- aCGaCGACGCGGUGCgccacCUUgcccgacuccucgucGCGGCGCAc -3'
miRNA:   3'- -GCaGCUGUGCUACG-----GAA---------------CGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 9565 0.67 0.53059
Target:  5'- -aUCGACuuguCGccGCCgaacgUGCGGUGCAGg -3'
miRNA:   3'- gcAGCUGu---GCuaCGGa----ACGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 1249 0.67 0.541285
Target:  5'- gGUCuGGCguucGCGGUGUCgguUGCGGUGCGg -3'
miRNA:   3'- gCAG-CUG----UGCUACGGa--ACGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 32832 0.67 0.556374
Target:  5'- aCGUCcuggcucaggcccaGCACGGUGUCUUGCagGGCGCc- -3'
miRNA:   3'- -GCAGc-------------UGUGCUACGGAACG--CCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 27902 0.66 0.62874
Target:  5'- aG-CGcACACGcgGCCUUgaccgGCGGCGUGGg -3'
miRNA:   3'- gCaGC-UGUGCuaCGGAA-----CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 25420 0.66 0.606674
Target:  5'- aCGgCGACGCGGcucucaaggGCCgccagUGCGGCGUu- -3'
miRNA:   3'- -GCaGCUGUGCUa--------CGGa----ACGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 3821 0.66 0.59567
Target:  5'- gCG-CGACaACGAUcGUCaggGCGGCGCGGu -3'
miRNA:   3'- -GCaGCUG-UGCUA-CGGaa-CGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 48273 0.66 0.584697
Target:  5'- gGUCGGCuCG--GCCUU-CGGCGCGGg -3'
miRNA:   3'- gCAGCUGuGCuaCGGAAcGCCGCGUU- -5'
12773 5' -56.6 NC_003387.1 + 45169 0.66 0.584697
Target:  5'- aGUgaUGACGCGAUcgGCCaggGCGGCaGCAGu -3'
miRNA:   3'- gCA--GCUGUGCUA--CGGaa-CGCCG-CGUU- -5'
12773 5' -56.6 NC_003387.1 + 21751 0.66 0.583602
Target:  5'- uG-CGACACGGUGCUguggggaUUccugggcagccaGCGGCGCAc -3'
miRNA:   3'- gCaGCUGUGCUACGG-------AA------------CGCCGCGUu -5'
12773 5' -56.6 NC_003387.1 + 23893 0.66 0.573764
Target:  5'- aCGUCGgcgagcACACGAUcGUCUUgGUGGCGUg- -3'
miRNA:   3'- -GCAGC------UGUGCUA-CGGAA-CGCCGCGuu -5'
12773 5' -56.6 NC_003387.1 + 11593 0.67 0.556374
Target:  5'- cCGUCGGCGCGcUGCCacuugauccggucgUGCaGCGCc- -3'
miRNA:   3'- -GCAGCUGUGCuACGGa-------------ACGcCGCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.