Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12774 | 3' | -57.4 | NC_003387.1 | + | 27192 | 0.67 | 0.529416 |
Target: 5'- aUCGGGuugccgaACGU-GACACCGGCGAucaGCUUg -3' miRNA: 3'- -AGUCC-------UGCAgCUGUGGCCGCU---UGGGu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 39127 | 0.67 | 0.537762 |
Target: 5'- gCGGGGCugccaGACugCGGCGAccagccgacguccuGCCCGu -3' miRNA: 3'- aGUCCUGcag--CUGugGCCGCU--------------UGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 23042 | 0.67 | 0.539855 |
Target: 5'- cUCGGccacgucGACGUCGACGUCGGCGAGgCg- -3' miRNA: 3'- -AGUC-------CUGCAGCUGUGGCCGCUUgGgu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 30129 | 0.67 | 0.561995 |
Target: 5'- --uGGGCGaguaGACGauGGCGAACCCGc -3' miRNA: 3'- aguCCUGCag--CUGUggCCGCUUGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 3835 | 0.67 | 0.572625 |
Target: 5'- gUCAGGGCGgcgcgguaggCGGCGCCGaCG-AUCCGg -3' miRNA: 3'- -AGUCCUGCa---------GCUGUGGCcGCuUGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 1484 | 0.67 | 0.572625 |
Target: 5'- cCAGGGCGUCGACGu---CGAGCaCCAg -3' miRNA: 3'- aGUCCUGCAGCUGUggccGCUUG-GGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 10333 | 0.67 | 0.540904 |
Target: 5'- aUCAGccgcGGCGUCGAUA-CGGCcGACCCc -3' miRNA: 3'- -AGUC----CUGCAGCUGUgGCCGcUUGGGu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 19476 | 0.67 | 0.576891 |
Target: 5'- gCAGGACGUCGucgagcacguACgucuugacggccaucGCCGaGCGGGCCUc -3' miRNA: 3'- aGUCCUGCAGC----------UG---------------UGGC-CGCUUGGGu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 22329 | 0.68 | 0.487461 |
Target: 5'- aUCAGGuaacucuccCGGCGCCGGUGGggcugGCCCAg -3' miRNA: 3'- -AGUCCugca-----GCUGUGGCCGCU-----UGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 44390 | 0.68 | 0.499587 |
Target: 5'- gUCGGGGuCGUCGAgGUCGGCcGGGCCg- -3' miRNA: 3'- -AGUCCU-GCAGCUgUGGCCG-CUUGGgu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 43156 | 0.68 | 0.489473 |
Target: 5'- aCAGGuGCG-CG-UGCUGGCGAAUCCAc -3' miRNA: 3'- aGUCC-UGCaGCuGUGGCCGCUUGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 2792 | 0.68 | 0.479455 |
Target: 5'- cUCAGGGCGUuugcUGACuuuUCGGCGAcgcgcaGCUCAg -3' miRNA: 3'- -AGUCCUGCA----GCUGu--GGCCGCU------UGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 935 | 0.68 | 0.498571 |
Target: 5'- cUCGGGGCGaUCGACGCCcagccaccagucgGGCGggUa-- -3' miRNA: 3'- -AGUCCUGC-AGCUGUGG-------------CCGCuuGggu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 19439 | 0.68 | 0.509792 |
Target: 5'- aCAGGGCGUUaAgGCCGuGCGGGCgCGu -3' miRNA: 3'- aGUCCUGCAGcUgUGGC-CGCUUGgGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 23860 | 0.68 | 0.459729 |
Target: 5'- gUCGGGGC--CGugGaCCGGCG-ACCCGg -3' miRNA: 3'- -AGUCCUGcaGCugU-GGCCGCuUGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 36892 | 0.68 | 0.459729 |
Target: 5'- aCGGGcaccGCGUCGGCgucacaACCGGCGGcgacgcggcACCCc -3' miRNA: 3'- aGUCC----UGCAGCUG------UGGCCGCU---------UGGGu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 17271 | 0.68 | 0.47647 |
Target: 5'- cCAGuucGACGaCGACcccgacagcuaacaGCCGGCGAAUCCGc -3' miRNA: 3'- aGUC---CUGCaGCUG--------------UGGCCGCUUGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 16061 | 0.68 | 0.459729 |
Target: 5'- cCAGGuCGgCGA-GCCGGUGAugCCAc -3' miRNA: 3'- aGUCCuGCaGCUgUGGCCGCUugGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 48878 | 0.68 | 0.499587 |
Target: 5'- --cGGAuCGUCGGCGCCGccuaccGCGcGCCCu -3' miRNA: 3'- aguCCU-GCAGCUGUGGC------CGCuUGGGu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 34817 | 0.68 | 0.47647 |
Target: 5'- gUCGGGGgcgucgagaauguuCGUCGACGgcCCGcGCGGGCCUu -3' miRNA: 3'- -AGUCCU--------------GCAGCUGU--GGC-CGCUUGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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