miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 43942 0.66 0.583303
Target:  5'- aUCAGGucgccCGcCGcCGCaCGGCGAagGCCCGc -3'
miRNA:   3'- -AGUCCu----GCaGCuGUG-GCCGCU--UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 7050 0.66 0.583303
Target:  5'- cCAGGACGUCaagcgggcGCugCGGCGGgAUCUg -3'
miRNA:   3'- aGUCCUGCAGc-------UGugGCCGCU-UGGGu -5'
12774 3' -57.4 NC_003387.1 + 43776 0.66 0.583303
Target:  5'- cCAGGACGacaccaGG-ACCGGCGucGCCCGc -3'
miRNA:   3'- aGUCCUGCag----CUgUGGCCGCu-UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 34343 0.66 0.583303
Target:  5'- gCAGccgaucGACGUCGACGuggucgaggUCGGCaAACCCAa -3'
miRNA:   3'- aGUC------CUGCAGCUGU---------GGCCGcUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18608 0.67 0.572625
Target:  5'- cCGcGACGUCGACGCCGcCGAucuGCCg- -3'
miRNA:   3'- aGUcCUGCAGCUGUGGCcGCU---UGGgu -5'
12774 3' -57.4 NC_003387.1 + 45160 0.67 0.561995
Target:  5'- -gAGGugGUCGcgugagcagGCACCGGCaaGAggaucggguguuGCCCGg -3'
miRNA:   3'- agUCCugCAGC---------UGUGGCCG--CU------------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 24745 0.67 0.561995
Target:  5'- -gAGGGCGccgcaaCGGCACCGGCcAAgCCGa -3'
miRNA:   3'- agUCCUGCa-----GCUGUGGCCGcUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 14190 0.67 0.551418
Target:  5'- -gAGGGCGUCGugAUggCGcGCGAGCUUg -3'
miRNA:   3'- agUCCUGCAGCugUG--GC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 18209 0.75 0.192308
Target:  5'- cUCGGcGACG-CGACgACCGGCGAccuggucGCCCGc -3'
miRNA:   3'- -AGUC-CUGCaGCUG-UGGCCGCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 46868 0.76 0.164428
Target:  5'- cCAGGACGguugCGGCGCCcccaccugcGGCGcAGCCCGg -3'
miRNA:   3'- aGUCCUGCa---GCUGUGG---------CCGC-UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 9355 0.8 0.080383
Target:  5'- cCAGGACGUCGACgaGCCGGUGGcgGCCgAg -3'
miRNA:   3'- aGUCCUGCAGCUG--UGGCCGCU--UGGgU- -5'
12774 3' -57.4 NC_003387.1 + 10791 0.68 0.499587
Target:  5'- gUCGGGuCGUCGGCGUCGGCGGcACaCGg -3'
miRNA:   3'- -AGUCCuGCAGCUGUGGCCGCU-UGgGU- -5'
12774 3' -57.4 NC_003387.1 + 3878 0.66 0.626321
Target:  5'- cCAGGGCGUgcACGCCGuGCGucGCgCCGa -3'
miRNA:   3'- aGUCCUGCAgcUGUGGC-CGCu-UG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 44390 0.68 0.499587
Target:  5'- gUCGGGGuCGUCGAgGUCGGCcGGGCCg- -3'
miRNA:   3'- -AGUCCU-GCAGCUgUGGCCG-CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 27192 0.67 0.529416
Target:  5'- aUCGGGuugccgaACGU-GACACCGGCGAucaGCUUg -3'
miRNA:   3'- -AGUCC-------UGCAgCUGUGGCCGCU---UGGGu -5'
12774 3' -57.4 NC_003387.1 + 39127 0.67 0.537762
Target:  5'- gCGGGGCugccaGACugCGGCGAccagccgacguccuGCCCGu -3'
miRNA:   3'- aGUCCUGcag--CUGugGCCGCU--------------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 23042 0.67 0.539855
Target:  5'- cUCGGccacgucGACGUCGACGUCGGCGAGgCg- -3'
miRNA:   3'- -AGUC-------CUGCAGCUGUGGCCGCUUgGgu -5'
12774 3' -57.4 NC_003387.1 + 30129 0.67 0.561995
Target:  5'- --uGGGCGaguaGACGauGGCGAACCCGc -3'
miRNA:   3'- aguCCUGCag--CUGUggCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 3835 0.67 0.572625
Target:  5'- gUCAGGGCGgcgcgguaggCGGCGCCGaCG-AUCCGg -3'
miRNA:   3'- -AGUCCUGCa---------GCUGUGGCcGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 1484 0.67 0.572625
Target:  5'- cCAGGGCGUCGACGu---CGAGCaCCAg -3'
miRNA:   3'- aGUCCUGCAGCUGUggccGCUUG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.