miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 40112 0.66 0.623085
Target:  5'- gCAGG-CGgCGGC-CCGGCGucgggcaaguucaaGGCCCAc -3'
miRNA:   3'- aGUCCuGCaGCUGuGGCCGC--------------UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 36892 0.68 0.459729
Target:  5'- aCGGGcaccGCGUCGGCgucacaACCGGCGGcgacgcggcACCCc -3'
miRNA:   3'- aGUCC----UGCAGCUG------UGGCCGCU---------UGGGu -5'
12774 3' -57.4 NC_003387.1 + 8092 0.67 0.530457
Target:  5'- ------gGUCGGCGCCaacccgcccgagGGCGAGCCCAg -3'
miRNA:   3'- aguccugCAGCUGUGG------------CCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 14190 0.67 0.551418
Target:  5'- -gAGGGCGUCGugAUggCGcGCGAGCUUg -3'
miRNA:   3'- agUCCUGCAGCugUG--GC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 18608 0.67 0.572625
Target:  5'- cCGcGACGUCGACGCCGcCGAucuGCCg- -3'
miRNA:   3'- aGUcCUGCAGCUGUGGCcGCU---UGGgu -5'
12774 3' -57.4 NC_003387.1 + 6861 0.66 0.630636
Target:  5'- cUCAGGGCGccaacaagacgccggUCGccgucgugGCACCGGCu-GCCUAg -3'
miRNA:   3'- -AGUCCUGC---------------AGC--------UGUGGCCGcuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 41654 0.66 0.619849
Target:  5'- gCGGuACGUCGACGacugcgaccugugguUCGGCGucAACCCGa -3'
miRNA:   3'- aGUCcUGCAGCUGU---------------GGCCGC--UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 39219 0.66 0.615537
Target:  5'- gUCGGGcagugggaGCGgguacCGGCGCCGGgCGAGgCCGu -3'
miRNA:   3'- -AGUCC--------UGCa----GCUGUGGCC-GCUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 14737 0.66 0.603691
Target:  5'- uUCAGGACGgcaUCGAgGgCCGGaUGGucaagcuGCCCAa -3'
miRNA:   3'- -AGUCCUGC---AGCUgU-GGCC-GCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 47201 0.66 0.583303
Target:  5'- cUCAGGugGccgccggugUCGGCAUugUGGUGGGCCUc -3'
miRNA:   3'- -AGUCCugC---------AGCUGUG--GCCGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 43716 0.66 0.63711
Target:  5'- cCAGG-UGcUCGACGgCGGCaugcggGAGCCCGc -3'
miRNA:   3'- aGUCCuGC-AGCUGUgGCCG------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 34817 0.68 0.47647
Target:  5'- gUCGGGGgcgucgagaauguuCGUCGACGgcCCGcGCGGGCCUu -3'
miRNA:   3'- -AGUCCU--------------GCAGCUGU--GGC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 16061 0.68 0.459729
Target:  5'- cCAGGuCGgCGA-GCCGGUGAugCCAc -3'
miRNA:   3'- aGUCCuGCaGCUgUGGCCGCUugGGU- -5'
12774 3' -57.4 NC_003387.1 + 39290 0.69 0.450029
Target:  5'- gCAGGuuGcCGAgguaguucaCACCGGCGAGCgCCGa -3'
miRNA:   3'- aGUCCugCaGCU---------GUGGCCGCUUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 2792 0.68 0.479455
Target:  5'- cUCAGGGCGUuugcUGACuuuUCGGCGAcgcgcaGCUCAg -3'
miRNA:   3'- -AGUCCUGCA----GCUGu--GGCCGCU------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 15642 0.66 0.604767
Target:  5'- aCGGcGAgGUCGACcaugUCGGCGAacgaauGCCCGc -3'
miRNA:   3'- aGUC-CUgCAGCUGu---GGCCGCU------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 22670 0.69 0.444264
Target:  5'- gUCAGGGCGcgcucgugggcggugUCGACGgCGGCGcuggcGGCCUg -3'
miRNA:   3'- -AGUCCUGC---------------AGCUGUgGCCGC-----UUGGGu -5'
12774 3' -57.4 NC_003387.1 + 26330 0.66 0.582233
Target:  5'- aUCAGcauugcgguagccGACGUCaGCACCGGauaGAACCa- -3'
miRNA:   3'- -AGUC-------------CUGCAGcUGUGGCCg--CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 19476 0.67 0.576891
Target:  5'- gCAGGACGUCGucgagcacguACgucuugacggccaucGCCGaGCGGGCCUc -3'
miRNA:   3'- aGUCCUGCAGC----------UG---------------UGGC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 1484 0.67 0.572625
Target:  5'- cCAGGGCGUCGACGu---CGAGCaCCAg -3'
miRNA:   3'- aGUCCUGCAGCUGUggccGCUUG-GGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.