miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 9355 0.8 0.080383
Target:  5'- cCAGGACGUCGACgaGCCGGUGGcgGCCgAg -3'
miRNA:   3'- aGUCCUGCAGCUG--UGGCCGCU--UGGgU- -5'
12774 3' -57.4 NC_003387.1 + 45160 0.67 0.561995
Target:  5'- -gAGGugGUCGcgugagcagGCACCGGCaaGAggaucggguguuGCCCGg -3'
miRNA:   3'- agUCCugCAGC---------UGUGGCCG--CU------------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 24745 0.67 0.561995
Target:  5'- -gAGGGCGccgcaaCGGCACCGGCcAAgCCGa -3'
miRNA:   3'- agUCCUGCa-----GCUGUGGCCGcUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 22329 0.68 0.487461
Target:  5'- aUCAGGuaacucuccCGGCGCCGGUGGggcugGCCCAg -3'
miRNA:   3'- -AGUCCugca-----GCUGUGGCCGCU-----UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 31031 0.69 0.430974
Target:  5'- cCGGGGCGgcggccagcaCGGCACCGGCGccgauGGCaCCGg -3'
miRNA:   3'- aGUCCUGCa---------GCUGUGGCCGC-----UUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 47201 0.66 0.583303
Target:  5'- cUCAGGugGccgccggugUCGGCAUugUGGUGGGCCUc -3'
miRNA:   3'- -AGUCCugC---------AGCUGUG--GCCGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 34343 0.66 0.583303
Target:  5'- gCAGccgaucGACGUCGACGuggucgaggUCGGCaAACCCAa -3'
miRNA:   3'- aGUC------CUGCAGCUGU---------GGCCGcUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 1416 0.71 0.343288
Target:  5'- --cGGACGUCGGC-CCGaGCGAuCCUg -3'
miRNA:   3'- aguCCUGCAGCUGuGGC-CGCUuGGGu -5'
12774 3' -57.4 NC_003387.1 + 8092 0.67 0.530457
Target:  5'- ------gGUCGGCGCCaacccgcccgagGGCGAGCCCAg -3'
miRNA:   3'- aguccugCAGCUGUGG------------CCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 19439 0.68 0.509792
Target:  5'- aCAGGGCGUUaAgGCCGuGCGGGCgCGu -3'
miRNA:   3'- aGUCCUGCAGcUgUGGC-CGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 13581 0.71 0.30899
Target:  5'- gCAGGACGUCGGCuggucgccgcaguCUGGC-AGCCCc -3'
miRNA:   3'- aGUCCUGCAGCUGu------------GGCCGcUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 25754 0.72 0.275994
Target:  5'- cUCGGcauGAUGuUCGGCACCGGC-AACCCGc -3'
miRNA:   3'- -AGUC---CUGC-AGCUGUGGCCGcUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 14737 0.66 0.603691
Target:  5'- uUCAGGACGgcaUCGAgGgCCGGaUGGucaagcuGCCCAa -3'
miRNA:   3'- -AGUCCUGC---AGCUgU-GGCC-GCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 42214 0.66 0.594019
Target:  5'- gCAGGACGgCGA--CCGGCGcACCgCGa -3'
miRNA:   3'- aGUCCUGCaGCUguGGCCGCuUGG-GU- -5'
12774 3' -57.4 NC_003387.1 + 14190 0.67 0.551418
Target:  5'- -gAGGGCGUCGugAUggCGcGCGAGCUUg -3'
miRNA:   3'- agUCCUGCAGCugUG--GC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 25578 0.69 0.440443
Target:  5'- cCGGcGGCGcCGACcCCGGCGGgcacggccucgACCCGc -3'
miRNA:   3'- aGUC-CUGCaGCUGuGGCCGCU-----------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 45105 0.69 0.430974
Target:  5'- cCAGGuCGUCGACGCC-GCGGugUa- -3'
miRNA:   3'- aGUCCuGCAGCUGUGGcCGCUugGgu -5'
12774 3' -57.4 NC_003387.1 + 24122 0.72 0.275994
Target:  5'- --cGGGCGUCGGCAgcuaucCCGGCcuGCCCGa -3'
miRNA:   3'- aguCCUGCAGCUGU------GGCCGcuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 48878 0.68 0.499587
Target:  5'- --cGGAuCGUCGGCGCCGccuaccGCGcGCCCu -3'
miRNA:   3'- aguCCU-GCAGCUGUGGC------CGCuUGGGu -5'
12774 3' -57.4 NC_003387.1 + 34467 0.67 0.530457
Target:  5'- --uGGAuCGUCGACAUggCGGCGGAUgCGg -3'
miRNA:   3'- aguCCU-GCAGCUGUG--GCCGCUUGgGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.