miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 19439 0.68 0.509792
Target:  5'- aCAGGGCGUUaAgGCCGuGCGGGCgCGu -3'
miRNA:   3'- aGUCCUGCAGcUgUGGC-CGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 17271 0.68 0.47647
Target:  5'- cCAGuucGACGaCGACcccgacagcuaacaGCCGGCGAAUCCGc -3'
miRNA:   3'- aGUC---CUGCaGCUG--------------UGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 6751 0.7 0.394328
Target:  5'- cCAGGcCacccUCGGCACCGGCGAgaaCCAg -3'
miRNA:   3'- aGUCCuGc---AGCUGUGGCCGCUug-GGU- -5'
12774 3' -57.4 NC_003387.1 + 12842 0.74 0.231271
Target:  5'- -aAGGGCGgCGuggacaccGCACCGGCGGGCCUg -3'
miRNA:   3'- agUCCUGCaGC--------UGUGGCCGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 7050 0.66 0.583303
Target:  5'- cCAGGACGUCaagcgggcGCugCGGCGGgAUCUg -3'
miRNA:   3'- aGUCCUGCAGc-------UGugGCCGCU-UGGGu -5'
12774 3' -57.4 NC_003387.1 + 10333 0.67 0.540904
Target:  5'- aUCAGccgcGGCGUCGAUA-CGGCcGACCCc -3'
miRNA:   3'- -AGUC----CUGCAGCUGUgGCCGcUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 23860 0.68 0.459729
Target:  5'- gUCGGGGC--CGugGaCCGGCG-ACCCGg -3'
miRNA:   3'- -AGUCCUGcaGCugU-GGCCGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18209 0.75 0.192308
Target:  5'- cUCGGcGACG-CGACgACCGGCGAccuggucGCCCGc -3'
miRNA:   3'- -AGUC-CUGCaGCUG-UGGCCGCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 11374 0.67 0.530457
Target:  5'- cCGGGuCGUCGuUugCGGCGAucgGCgCCAc -3'
miRNA:   3'- aGUCCuGCAGCuGugGCCGCU---UG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 46868 0.76 0.164428
Target:  5'- cCAGGACGguugCGGCGCCcccaccugcGGCGcAGCCCGg -3'
miRNA:   3'- aGUCCUGCa---GCUGUGG---------CCGC-UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 36892 0.68 0.459729
Target:  5'- aCGGGcaccGCGUCGGCgucacaACCGGCGGcgacgcggcACCCc -3'
miRNA:   3'- aGUCC----UGCAGCUG------UGGCCGCU---------UGGGu -5'
12774 3' -57.4 NC_003387.1 + 4410 0.67 0.520084
Target:  5'- gCAGaACGUCGACGCCgagcugGGCaaggcguucgccGAGCCCGc -3'
miRNA:   3'- aGUCcUGCAGCUGUGG------CCG------------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 27857 0.69 0.440443
Target:  5'- gCGGcGccACGaUCGACACCGGCgcggucgagcagGAGCCCGg -3'
miRNA:   3'- aGUC-C--UGC-AGCUGUGGCCG------------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 10511 0.7 0.394328
Target:  5'- gCGGGGCGcUCGGC-UCGGCGAugCgGg -3'
miRNA:   3'- aGUCCUGC-AGCUGuGGCCGCUugGgU- -5'
12774 3' -57.4 NC_003387.1 + 5145 0.71 0.319612
Target:  5'- -aGGGGCGcUCGGCGCCGGuCGGugCa- -3'
miRNA:   3'- agUCCUGC-AGCUGUGGCC-GCUugGgu -5'
12774 3' -57.4 NC_003387.1 + 24122 0.72 0.275994
Target:  5'- --cGGGCGUCGGCAgcuaucCCGGCcuGCCCGa -3'
miRNA:   3'- aguCCUGCAGCUGU------GGCCGcuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 19144 0.66 0.594019
Target:  5'- cCGGGcgguggcuCGUCGACGCUgucgagGGCGcGGCCCGc -3'
miRNA:   3'- aGUCCu-------GCAGCUGUGG------CCGC-UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 43942 0.66 0.583303
Target:  5'- aUCAGGucgccCGcCGcCGCaCGGCGAagGCCCGc -3'
miRNA:   3'- -AGUCCu----GCaGCuGUG-GCCGCU--UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18608 0.67 0.572625
Target:  5'- cCGcGACGUCGACGCCGcCGAucuGCCg- -3'
miRNA:   3'- aGUcCUGCAGCUGUGGCcGCU---UGGgu -5'
12774 3' -57.4 NC_003387.1 + 14190 0.67 0.551418
Target:  5'- -gAGGGCGUCGugAUggCGcGCGAGCUUg -3'
miRNA:   3'- agUCCUGCAGCugUG--GC-CGCUUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.