miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 10511 0.7 0.394328
Target:  5'- gCGGGGCGcUCGGC-UCGGCGAugCgGg -3'
miRNA:   3'- aGUCCUGC-AGCUGuGGCCGCUugGgU- -5'
12774 3' -57.4 NC_003387.1 + 11273 0.7 0.4033
Target:  5'- gUCAGGGCGgCGucagggccGCGCCGGUGAcCUCGg -3'
miRNA:   3'- -AGUCCUGCaGC--------UGUGGCCGCUuGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18935 0.69 0.4124
Target:  5'- aUCGGG-UGUCGGCACCaGCcGGGCCa- -3'
miRNA:   3'- -AGUCCuGCAGCUGUGGcCG-CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 52078 0.69 0.4124
Target:  5'- uUCAucGGGCGUCGcugccGCGgCGGCGAcgcuGCCCu -3'
miRNA:   3'- -AGU--CCUGCAGC-----UGUgGCCGCU----UGGGu -5'
12774 3' -57.4 NC_003387.1 + 3225 0.69 0.421625
Target:  5'- gCGacACGUCGACGCCgGGCGGGCgCAc -3'
miRNA:   3'- aGUccUGCAGCUGUGG-CCGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 45105 0.69 0.430974
Target:  5'- cCAGGuCGUCGACGCC-GCGGugUa- -3'
miRNA:   3'- aGUCCuGCAGCUGUGGcCGCUugGgu -5'
12774 3' -57.4 NC_003387.1 + 31031 0.69 0.430974
Target:  5'- cCGGGGCGgcggccagcaCGGCACCGGCGccgauGGCaCCGg -3'
miRNA:   3'- aGUCCUGCa---------GCUGUGGCCGC-----UUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 27857 0.69 0.440443
Target:  5'- gCGGcGccACGaUCGACACCGGCgcggucgagcagGAGCCCGg -3'
miRNA:   3'- aGUC-C--UGC-AGCUGUGGCCG------------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 25578 0.69 0.440443
Target:  5'- cCGGcGGCGcCGACcCCGGCGGgcacggccucgACCCGc -3'
miRNA:   3'- aGUC-CUGCaGCUGuGGCCGCU-----------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 22670 0.69 0.444264
Target:  5'- gUCAGGGCGcgcucgugggcggugUCGACGgCGGCGcuggcGGCCUg -3'
miRNA:   3'- -AGUCCUGC---------------AGCUGUgGCCGC-----UUGGGu -5'
12774 3' -57.4 NC_003387.1 + 51435 0.69 0.449066
Target:  5'- cCAGGGCGUCGAggcgcauCACCG-UGAACaCCu -3'
miRNA:   3'- aGUCCUGCAGCU-------GUGGCcGCUUG-GGu -5'
12774 3' -57.4 NC_003387.1 + 39290 0.69 0.450029
Target:  5'- gCAGGuuGcCGAgguaguucaCACCGGCGAGCgCCGa -3'
miRNA:   3'- aGUCCugCaGCU---------GUGGCCGCUUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 16061 0.68 0.459729
Target:  5'- cCAGGuCGgCGA-GCCGGUGAugCCAc -3'
miRNA:   3'- aGUCCuGCaGCUgUGGCCGCUugGGU- -5'
12774 3' -57.4 NC_003387.1 + 36892 0.68 0.459729
Target:  5'- aCGGGcaccGCGUCGGCgucacaACCGGCGGcgacgcggcACCCc -3'
miRNA:   3'- aGUCC----UGCAGCUG------UGGCCGCU---------UGGGu -5'
12774 3' -57.4 NC_003387.1 + 23860 0.68 0.459729
Target:  5'- gUCGGGGC--CGugGaCCGGCG-ACCCGg -3'
miRNA:   3'- -AGUCCUGcaGCugU-GGCCGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18963 0.68 0.459729
Target:  5'- cUCGGuuuCGUCGGCAccCCGGCGAGCaUCGa -3'
miRNA:   3'- -AGUCcu-GCAGCUGU--GGCCGCUUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 34817 0.68 0.47647
Target:  5'- gUCGGGGgcgucgagaauguuCGUCGACGgcCCGcGCGGGCCUu -3'
miRNA:   3'- -AGUCCU--------------GCAGCUGU--GGC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 17271 0.68 0.47647
Target:  5'- cCAGuucGACGaCGACcccgacagcuaacaGCCGGCGAAUCCGc -3'
miRNA:   3'- aGUC---CUGCaGCUG--------------UGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 2792 0.68 0.479455
Target:  5'- cUCAGGGCGUuugcUGACuuuUCGGCGAcgcgcaGCUCAg -3'
miRNA:   3'- -AGUCCUGCA----GCUGu--GGCCGCU------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 22329 0.68 0.487461
Target:  5'- aUCAGGuaacucuccCGGCGCCGGUGGggcugGCCCAg -3'
miRNA:   3'- -AGUCCugca-----GCUGUGGCCGCU-----UGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.