miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 51590 1.09 0.000724
Target:  5'- aUCAGGACGUCGACACCGGCGAACCCAc -3'
miRNA:   3'- -AGUCCUGCAGCUGUGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 9355 0.8 0.080383
Target:  5'- cCAGGACGUCGACgaGCCGGUGGcgGCCgAg -3'
miRNA:   3'- aGUCCUGCAGCUG--UGGCCGCU--UGGgU- -5'
12774 3' -57.4 NC_003387.1 + 46868 0.76 0.164428
Target:  5'- cCAGGACGguugCGGCGCCcccaccugcGGCGcAGCCCGg -3'
miRNA:   3'- aGUCCUGCa---GCUGUGG---------CCGC-UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18209 0.75 0.192308
Target:  5'- cUCGGcGACG-CGACgACCGGCGAccuggucGCCCGc -3'
miRNA:   3'- -AGUC-CUGCaGCUG-UGGCCGCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 12842 0.74 0.231271
Target:  5'- -aAGGGCGgCGuggacaccGCACCGGCGGGCCUg -3'
miRNA:   3'- agUCCUGCaGC--------UGUGGCCGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 39203 0.73 0.25603
Target:  5'- cCAGGccgACGcugucagCGACuccACCGGCGAACCCGc -3'
miRNA:   3'- aGUCC---UGCa------GCUG---UGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 25298 0.72 0.275994
Target:  5'- cCAGGgcgACGUCGGCG-CGGUGGugCCAg -3'
miRNA:   3'- aGUCC---UGCAGCUGUgGCCGCUugGGU- -5'
12774 3' -57.4 NC_003387.1 + 24122 0.72 0.275994
Target:  5'- --cGGGCGUCGGCAgcuaucCCGGCcuGCCCGa -3'
miRNA:   3'- aguCCUGCAGCUGU------GGCCGcuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 25754 0.72 0.275994
Target:  5'- cUCGGcauGAUGuUCGGCACCGGC-AACCCGc -3'
miRNA:   3'- -AGUC---CUGC-AGCUGUGGCCGcUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 9263 0.72 0.289982
Target:  5'- aCAGGACGUCGcCGCCGGUcAGCa-- -3'
miRNA:   3'- aGUCCUGCAGCuGUGGCCGcUUGggu -5'
12774 3' -57.4 NC_003387.1 + 13581 0.71 0.30899
Target:  5'- gCAGGACGUCGGCuggucgccgcaguCUGGC-AGCCCc -3'
miRNA:   3'- aGUCCUGCAGCUGu------------GGCCGcUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 5145 0.71 0.319612
Target:  5'- -aGGGGCGcUCGGCGCCGGuCGGugCa- -3'
miRNA:   3'- agUCCUGC-AGCUGUGGCC-GCUugGgu -5'
12774 3' -57.4 NC_003387.1 + 24154 0.71 0.325025
Target:  5'- -gAGGGCGUCGuCGaCGGCGAucgccgccucggucGCCCAa -3'
miRNA:   3'- agUCCUGCAGCuGUgGCCGCU--------------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 1831 0.71 0.330506
Target:  5'- cCucGACGUCGACGCCcucgacguucucaagGGCG-ACCCAa -3'
miRNA:   3'- aGucCUGCAGCUGUGG---------------CCGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 7657 0.71 0.335258
Target:  5'- cCAGGACGgcccUCGACGCgcuCGGCG-ACCUg -3'
miRNA:   3'- aGUCCUGC----AGCUGUG---GCCGCuUGGGu -5'
12774 3' -57.4 NC_003387.1 + 1416 0.71 0.343288
Target:  5'- --cGGACGUCGGC-CCGaGCGAuCCUg -3'
miRNA:   3'- aguCCUGCAGCUGuGGC-CGCUuGGGu -5'
12774 3' -57.4 NC_003387.1 + 32287 0.71 0.350633
Target:  5'- -gGGGGCG-CGaggaGCACCGGCGGcugcacaACCCGa -3'
miRNA:   3'- agUCCUGCaGC----UGUGGCCGCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 23445 0.7 0.359761
Target:  5'- aCAGGGCGUCGAUGCgGGUu-GCCa- -3'
miRNA:   3'- aGUCCUGCAGCUGUGgCCGcuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 34117 0.7 0.385487
Target:  5'- aUCGGcGGCGUCGACGUCGcggugcGCGAACUCGa -3'
miRNA:   3'- -AGUC-CUGCAGCUGUGGC------CGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 6751 0.7 0.394328
Target:  5'- cCAGGcCacccUCGGCACCGGCGAgaaCCAg -3'
miRNA:   3'- aGUCCuGc---AGCUGUGGCCGCUug-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.