miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 935 0.68 0.498571
Target:  5'- cUCGGGGCGaUCGACGCCcagccaccagucgGGCGggUa-- -3'
miRNA:   3'- -AGUCCUGC-AGCUGUGG-------------CCGCuuGggu -5'
12774 3' -57.4 NC_003387.1 + 1320 0.68 0.499587
Target:  5'- gCAGGcgcuCGcCGGuCACCGGCcGAAUCCGa -3'
miRNA:   3'- aGUCCu---GCaGCU-GUGGCCG-CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 1416 0.71 0.343288
Target:  5'- --cGGACGUCGGC-CCGaGCGAuCCUg -3'
miRNA:   3'- aguCCUGCAGCUGuGGC-CGCUuGGGu -5'
12774 3' -57.4 NC_003387.1 + 1484 0.67 0.572625
Target:  5'- cCAGGGCGUCGACGu---CGAGCaCCAg -3'
miRNA:   3'- aGUCCUGCAGCUGUggccGCUUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 1831 0.71 0.330506
Target:  5'- cCucGACGUCGACGCCcucgacguucucaagGGCG-ACCCAa -3'
miRNA:   3'- aGucCUGCAGCUGUGG---------------CCGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 2275 0.66 0.594019
Target:  5'- gUCGGcucGACGUCGuccuCGCUGGCGuACgCCGa -3'
miRNA:   3'- -AGUC---CUGCAGCu---GUGGCCGCuUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 2792 0.68 0.479455
Target:  5'- cUCAGGGCGUuugcUGACuuuUCGGCGAcgcgcaGCUCAg -3'
miRNA:   3'- -AGUCCUGCA----GCUGu--GGCCGCU------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 3225 0.69 0.421625
Target:  5'- gCGacACGUCGACGCCgGGCGGGCgCAc -3'
miRNA:   3'- aGUccUGCAGCUGUGG-CCGCUUGgGU- -5'
12774 3' -57.4 NC_003387.1 + 3415 0.66 0.626321
Target:  5'- cUCGGGGCcgugcccUCGGCGugcUCGGCGAGCaCCu -3'
miRNA:   3'- -AGUCCUGc------AGCUGU---GGCCGCUUG-GGu -5'
12774 3' -57.4 NC_003387.1 + 3835 0.67 0.572625
Target:  5'- gUCAGGGCGgcgcgguaggCGGCGCCGaCG-AUCCGg -3'
miRNA:   3'- -AGUCCUGCa---------GCUGUGGCcGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 3878 0.66 0.626321
Target:  5'- cCAGGGCGUgcACGCCGuGCGucGCgCCGa -3'
miRNA:   3'- aGUCCUGCAgcUGUGGC-CGCu-UG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 4410 0.67 0.520084
Target:  5'- gCAGaACGUCGACGCCgagcugGGCaaggcguucgccGAGCCCGc -3'
miRNA:   3'- aGUCcUGCAGCUGUGG------CCG------------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 5145 0.71 0.319612
Target:  5'- -aGGGGCGcUCGGCGCCGGuCGGugCa- -3'
miRNA:   3'- agUCCUGC-AGCUGUGGCC-GCUugGgu -5'
12774 3' -57.4 NC_003387.1 + 5508 0.66 0.604767
Target:  5'- -gAGGcccaccacaAUGcCGACACCGGCGGccACCUg -3'
miRNA:   3'- agUCC---------UGCaGCUGUGGCCGCU--UGGGu -5'
12774 3' -57.4 NC_003387.1 + 6751 0.7 0.394328
Target:  5'- cCAGGcCacccUCGGCACCGGCGAgaaCCAg -3'
miRNA:   3'- aGUCCuGc---AGCUGUGGCCGCUug-GGU- -5'
12774 3' -57.4 NC_003387.1 + 6861 0.66 0.630636
Target:  5'- cUCAGGGCGccaacaagacgccggUCGccgucgugGCACCGGCu-GCCUAg -3'
miRNA:   3'- -AGUCCUGC---------------AGC--------UGUGGCCGcuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 7050 0.66 0.583303
Target:  5'- cCAGGACGUCaagcgggcGCugCGGCGGgAUCUg -3'
miRNA:   3'- aGUCCUGCAGc-------UGugGCCGCU-UGGGu -5'
12774 3' -57.4 NC_003387.1 + 7657 0.71 0.335258
Target:  5'- cCAGGACGgcccUCGACGCgcuCGGCG-ACCUg -3'
miRNA:   3'- aGUCCUGC----AGCUGUG---GCCGCuUGGGu -5'
12774 3' -57.4 NC_003387.1 + 8092 0.67 0.530457
Target:  5'- ------gGUCGGCGCCaacccgcccgagGGCGAGCCCAg -3'
miRNA:   3'- aguccugCAGCUGUGG------------CCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 9263 0.72 0.289982
Target:  5'- aCAGGACGUCGcCGCCGGUcAGCa-- -3'
miRNA:   3'- aGUCCUGCAGCuGUGGCCGcUUGggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.