miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 10437 0.66 0.594019
Target:  5'- gUCGGGGCGaaauagUCGcacguaGCugCGGCGuguuCCCAg -3'
miRNA:   3'- -AGUCCUGC------AGC------UGugGCCGCuu--GGGU- -5'
12774 3' -57.4 NC_003387.1 + 34343 0.66 0.583303
Target:  5'- gCAGccgaucGACGUCGACGuggucgaggUCGGCaAACCCAa -3'
miRNA:   3'- aGUC------CUGCAGCUGU---------GGCCGcUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 43776 0.66 0.583303
Target:  5'- cCAGGACGacaccaGG-ACCGGCGucGCCCGc -3'
miRNA:   3'- aGUCCUGCag----CUgUGGCCGCu-UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 42214 0.66 0.594019
Target:  5'- gCAGGACGgCGA--CCGGCGcACCgCGa -3'
miRNA:   3'- aGUCCUGCaGCUguGGCCGCuUGG-GU- -5'
12774 3' -57.4 NC_003387.1 + 19144 0.66 0.594019
Target:  5'- cCGGGcgguggcuCGUCGACGCUgucgagGGCGcGGCCCGc -3'
miRNA:   3'- aGUCCu-------GCAGCUGUGG------CCGC-UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 7050 0.66 0.583303
Target:  5'- cCAGGACGUCaagcgggcGCugCGGCGGgAUCUg -3'
miRNA:   3'- aGUCCUGCAGc-------UGugGCCGCU-UGGGu -5'
12774 3' -57.4 NC_003387.1 + 43942 0.66 0.583303
Target:  5'- aUCAGGucgccCGcCGcCGCaCGGCGAagGCCCGc -3'
miRNA:   3'- -AGUCCu----GCaGCuGUG-GCCGCU--UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 47201 0.66 0.583303
Target:  5'- cUCAGGugGccgccggugUCGGCAUugUGGUGGGCCUc -3'
miRNA:   3'- -AGUCCugC---------AGCUGUG--GCCGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 43716 0.66 0.63711
Target:  5'- cCAGG-UGcUCGACGgCGGCaugcggGAGCCCGc -3'
miRNA:   3'- aGUCCuGC-AGCUGUgGCCG------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 26330 0.66 0.582233
Target:  5'- aUCAGcauugcgguagccGACGUCaGCACCGGauaGAACCa- -3'
miRNA:   3'- -AGUC-------------CUGCAGcUGUGGCCg--CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 28047 0.66 0.594019
Target:  5'- gUCGGGauaGCGcgagucacccUCGGCGCUGGCGAcCUCGc -3'
miRNA:   3'- -AGUCC---UGC----------AGCUGUGGCCGCUuGGGU- -5'
12774 3' -57.4 NC_003387.1 + 23843 0.66 0.63711
Target:  5'- cCGGGAC-UCGGCGCCGugccgcucGCGGuaccaguccgACCCGc -3'
miRNA:   3'- aGUCCUGcAGCUGUGGC--------CGCU----------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 2275 0.66 0.594019
Target:  5'- gUCGGcucGACGUCGuccuCGCUGGCGuACgCCGa -3'
miRNA:   3'- -AGUC---CUGCAGCu---GUGGCCGCuUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 28603 0.66 0.594019
Target:  5'- cCGGGAuagcUGcCGACGCCcgcaugccaGGCGAugCCGa -3'
miRNA:   3'- aGUCCU----GCaGCUGUGG---------CCGCUugGGU- -5'
12774 3' -57.4 NC_003387.1 + 5508 0.66 0.604767
Target:  5'- -gAGGcccaccacaAUGcCGACACCGGCGGccACCUg -3'
miRNA:   3'- agUCC---------UGCaGCUGUGGCCGCU--UGGGu -5'
12774 3' -57.4 NC_003387.1 + 15642 0.66 0.604767
Target:  5'- aCGGcGAgGUCGACcaugUCGGCGAacgaauGCCCGc -3'
miRNA:   3'- aGUC-CUgCAGCUGu---GGCCGCU------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 21842 0.66 0.615537
Target:  5'- gCAGcG-UGUgGACACCGGCGcACCa- -3'
miRNA:   3'- aGUC-CuGCAgCUGUGGCCGCuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 42804 0.66 0.615537
Target:  5'- gUAGGGCGUCGAuCACgUGuGCGAGCa-- -3'
miRNA:   3'- aGUCCUGCAGCU-GUG-GC-CGCUUGggu -5'
12774 3' -57.4 NC_003387.1 + 31048 0.66 0.626321
Target:  5'- cCAGGGCGUCGGCGaacacgugcUCGGCc-GCCg- -3'
miRNA:   3'- aGUCCUGCAGCUGU---------GGCCGcuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 3415 0.66 0.626321
Target:  5'- cUCGGGGCcgugcccUCGGCGugcUCGGCGAGCaCCu -3'
miRNA:   3'- -AGUCCUGc------AGCUGU---GGCCGCUUG-GGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.