miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 9355 0.8 0.080383
Target:  5'- cCAGGACGUCGACgaGCCGGUGGcgGCCgAg -3'
miRNA:   3'- aGUCCUGCAGCUG--UGGCCGCU--UGGgU- -5'
12774 3' -57.4 NC_003387.1 + 23860 0.68 0.459729
Target:  5'- gUCGGGGC--CGugGaCCGGCG-ACCCGg -3'
miRNA:   3'- -AGUCCUGcaGCugU-GGCCGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 17271 0.68 0.47647
Target:  5'- cCAGuucGACGaCGACcccgacagcuaacaGCCGGCGAAUCCGc -3'
miRNA:   3'- aGUC---CUGCaGCUG--------------UGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 43716 0.66 0.63711
Target:  5'- cCAGG-UGcUCGACGgCGGCaugcggGAGCCCGc -3'
miRNA:   3'- aGUCCuGC-AGCUGUgGCCG------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 24122 0.72 0.275994
Target:  5'- --cGGGCGUCGGCAgcuaucCCGGCcuGCCCGa -3'
miRNA:   3'- aguCCUGCAGCUGU------GGCCGcuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 25754 0.72 0.275994
Target:  5'- cUCGGcauGAUGuUCGGCACCGGC-AACCCGc -3'
miRNA:   3'- -AGUC---CUGC-AGCUGUGGCCGcUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 5145 0.71 0.319612
Target:  5'- -aGGGGCGcUCGGCGCCGGuCGGugCa- -3'
miRNA:   3'- agUCCUGC-AGCUGUGGCC-GCUugGgu -5'
12774 3' -57.4 NC_003387.1 + 1416 0.71 0.343288
Target:  5'- --cGGACGUCGGC-CCGaGCGAuCCUg -3'
miRNA:   3'- aguCCUGCAGCUGuGGC-CGCUuGGGu -5'
12774 3' -57.4 NC_003387.1 + 10511 0.7 0.394328
Target:  5'- gCGGGGCGcUCGGC-UCGGCGAugCgGg -3'
miRNA:   3'- aGUCCUGC-AGCUGuGGCCGCUugGgU- -5'
12774 3' -57.4 NC_003387.1 + 18963 0.68 0.459729
Target:  5'- cUCGGuuuCGUCGGCAccCCGGCGAGCaUCGa -3'
miRNA:   3'- -AGUCcu-GCAGCUGU--GGCCGCUUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 45105 0.69 0.430974
Target:  5'- cCAGGuCGUCGACGCC-GCGGugUa- -3'
miRNA:   3'- aGUCCuGCAGCUGUGGcCGCUugGgu -5'
12774 3' -57.4 NC_003387.1 + 6751 0.7 0.394328
Target:  5'- cCAGGcCacccUCGGCACCGGCGAgaaCCAg -3'
miRNA:   3'- aGUCCuGc---AGCUGUGGCCGCUug-GGU- -5'
12774 3' -57.4 NC_003387.1 + 46868 0.76 0.164428
Target:  5'- cCAGGACGguugCGGCGCCcccaccugcGGCGcAGCCCGg -3'
miRNA:   3'- aGUCCUGCa---GCUGUGG---------CCGC-UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 27857 0.69 0.440443
Target:  5'- gCGGcGccACGaUCGACACCGGCgcggucgagcagGAGCCCGg -3'
miRNA:   3'- aGUC-C--UGC-AGCUGUGGCCG------------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18209 0.75 0.192308
Target:  5'- cUCGGcGACG-CGACgACCGGCGAccuggucGCCCGc -3'
miRNA:   3'- -AGUC-CUGCaGCUG-UGGCCGCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 32287 0.71 0.350633
Target:  5'- -gGGGGCG-CGaggaGCACCGGCGGcugcacaACCCGa -3'
miRNA:   3'- agUCCUGCaGC----UGUGGCCGCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 25578 0.69 0.440443
Target:  5'- cCGGcGGCGcCGACcCCGGCGGgcacggccucgACCCGc -3'
miRNA:   3'- aGUC-CUGCaGCUGuGGCCGCU-----------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 36892 0.68 0.459729
Target:  5'- aCGGGcaccGCGUCGGCgucacaACCGGCGGcgacgcggcACCCc -3'
miRNA:   3'- aGUCC----UGCAGCUG------UGGCCGCU---------UGGGu -5'
12774 3' -57.4 NC_003387.1 + 12842 0.74 0.231271
Target:  5'- -aAGGGCGgCGuggacaccGCACCGGCGGGCCUg -3'
miRNA:   3'- agUCCUGCaGC--------UGUGGCCGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 13581 0.71 0.30899
Target:  5'- gCAGGACGUCGGCuggucgccgcaguCUGGC-AGCCCc -3'
miRNA:   3'- aGUCCUGCAGCUGu------------GGCCGcUUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.