miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 44390 0.68 0.499587
Target:  5'- gUCGGGGuCGUCGAgGUCGGCcGGGCCg- -3'
miRNA:   3'- -AGUCCU-GCAGCUgUGGCCG-CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 26330 0.66 0.582233
Target:  5'- aUCAGcauugcgguagccGACGUCaGCACCGGauaGAACCa- -3'
miRNA:   3'- -AGUC-------------CUGCAGcUGUGGCCg--CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 19476 0.67 0.576891
Target:  5'- gCAGGACGUCGucgagcacguACgucuugacggccaucGCCGaGCGGGCCUc -3'
miRNA:   3'- aGUCCUGCAGC----------UG---------------UGGC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 1484 0.67 0.572625
Target:  5'- cCAGGGCGUCGACGu---CGAGCaCCAg -3'
miRNA:   3'- aGUCCUGCAGCUGUggccGCUUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 3835 0.67 0.572625
Target:  5'- gUCAGGGCGgcgcgguaggCGGCGCCGaCG-AUCCGg -3'
miRNA:   3'- -AGUCCUGCa---------GCUGUGGCcGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 30129 0.67 0.561995
Target:  5'- --uGGGCGaguaGACGauGGCGAACCCGc -3'
miRNA:   3'- aguCCUGCag--CUGUggCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 23042 0.67 0.539855
Target:  5'- cUCGGccacgucGACGUCGACGUCGGCGAGgCg- -3'
miRNA:   3'- -AGUC-------CUGCAGCUGUGGCCGCUUgGgu -5'
12774 3' -57.4 NC_003387.1 + 39127 0.67 0.537762
Target:  5'- gCGGGGCugccaGACugCGGCGAccagccgacguccuGCCCGu -3'
miRNA:   3'- aGUCCUGcag--CUGugGCCGCU--------------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 27192 0.67 0.529416
Target:  5'- aUCGGGuugccgaACGU-GACACCGGCGAucaGCUUg -3'
miRNA:   3'- -AGUCC-------UGCAgCUGUGGCCGCU---UGGGu -5'
12774 3' -57.4 NC_003387.1 + 28047 0.66 0.594019
Target:  5'- gUCGGGauaGCGcgagucacccUCGGCGCUGGCGAcCUCGc -3'
miRNA:   3'- -AGUCC---UGC----------AGCUGUGGCCGCUuGGGU- -5'
12774 3' -57.4 NC_003387.1 + 10437 0.66 0.594019
Target:  5'- gUCGGGGCGaaauagUCGcacguaGCugCGGCGuguuCCCAg -3'
miRNA:   3'- -AGUCCUGC------AGC------UGugGCCGCuu--GGGU- -5'
12774 3' -57.4 NC_003387.1 + 2275 0.66 0.594019
Target:  5'- gUCGGcucGACGUCGuccuCGCUGGCGuACgCCGa -3'
miRNA:   3'- -AGUC---CUGCAGCu---GUGGCCGCuUG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 3878 0.66 0.626321
Target:  5'- cCAGGGCGUgcACGCCGuGCGucGCgCCGa -3'
miRNA:   3'- aGUCCUGCAgcUGUGGC-CGCu-UG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 3415 0.66 0.626321
Target:  5'- cUCGGGGCcgugcccUCGGCGugcUCGGCGAGCaCCu -3'
miRNA:   3'- -AGUCCUGc------AGCUGU---GGCCGCUUG-GGu -5'
12774 3' -57.4 NC_003387.1 + 31048 0.66 0.626321
Target:  5'- cCAGGGCGUCGGCGaacacgugcUCGGCc-GCCg- -3'
miRNA:   3'- aGUCCUGCAGCUGU---------GGCCGcuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 42804 0.66 0.615537
Target:  5'- gUAGGGCGUCGAuCACgUGuGCGAGCa-- -3'
miRNA:   3'- aGUCCUGCAGCU-GUG-GC-CGCUUGggu -5'
12774 3' -57.4 NC_003387.1 + 21842 0.66 0.615537
Target:  5'- gCAGcG-UGUgGACACCGGCGcACCa- -3'
miRNA:   3'- aGUC-CuGCAgCUGUGGCCGCuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 15642 0.66 0.604767
Target:  5'- aCGGcGAgGUCGACcaugUCGGCGAacgaauGCCCGc -3'
miRNA:   3'- aGUC-CUgCAGCUGu---GGCCGCU------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 5508 0.66 0.604767
Target:  5'- -gAGGcccaccacaAUGcCGACACCGGCGGccACCUg -3'
miRNA:   3'- agUCC---------UGCaGCUGUGGCCGCU--UGGGu -5'
12774 3' -57.4 NC_003387.1 + 28603 0.66 0.594019
Target:  5'- cCGGGAuagcUGcCGACGCCcgcaugccaGGCGAugCCGa -3'
miRNA:   3'- aGUCCU----GCaGCUGUGG---------CCGCUugGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.