Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12774 | 3' | -57.4 | NC_003387.1 | + | 27192 | 0.67 | 0.529416 |
Target: 5'- aUCGGGuugccgaACGU-GACACCGGCGAucaGCUUg -3' miRNA: 3'- -AGUCC-------UGCAgCUGUGGCCGCU---UGGGu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 23843 | 0.66 | 0.63711 |
Target: 5'- cCGGGAC-UCGGCGCCGugccgcucGCGGuaccaguccgACCCGc -3' miRNA: 3'- aGUCCUGcAGCUGUGGC--------CGCU----------UGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 3415 | 0.66 | 0.626321 |
Target: 5'- cUCGGGGCcgugcccUCGGCGugcUCGGCGAGCaCCu -3' miRNA: 3'- -AGUCCUGc------AGCUGU---GGCCGCUUG-GGu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 31048 | 0.66 | 0.626321 |
Target: 5'- cCAGGGCGUCGGCGaacacgugcUCGGCc-GCCg- -3' miRNA: 3'- aGUCCUGCAGCUGU---------GGCCGcuUGGgu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 42804 | 0.66 | 0.615537 |
Target: 5'- gUAGGGCGUCGAuCACgUGuGCGAGCa-- -3' miRNA: 3'- aGUCCUGCAGCU-GUG-GC-CGCUUGggu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 21842 | 0.66 | 0.615537 |
Target: 5'- gCAGcG-UGUgGACACCGGCGcACCa- -3' miRNA: 3'- aGUC-CuGCAgCUGUGGCCGCuUGGgu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 15642 | 0.66 | 0.604767 |
Target: 5'- aCGGcGAgGUCGACcaugUCGGCGAacgaauGCCCGc -3' miRNA: 3'- aGUC-CUgCAGCUGu---GGCCGCU------UGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 5508 | 0.66 | 0.604767 |
Target: 5'- -gAGGcccaccacaAUGcCGACACCGGCGGccACCUg -3' miRNA: 3'- agUCC---------UGCaGCUGUGGCCGCU--UGGGu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 28603 | 0.66 | 0.594019 |
Target: 5'- cCGGGAuagcUGcCGACGCCcgcaugccaGGCGAugCCGa -3' miRNA: 3'- aGUCCU----GCaGCUGUGG---------CCGCUugGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 2275 | 0.66 | 0.594019 |
Target: 5'- gUCGGcucGACGUCGuccuCGCUGGCGuACgCCGa -3' miRNA: 3'- -AGUC---CUGCAGCu---GUGGCCGCuUG-GGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 10437 | 0.66 | 0.594019 |
Target: 5'- gUCGGGGCGaaauagUCGcacguaGCugCGGCGuguuCCCAg -3' miRNA: 3'- -AGUCCUGC------AGC------UGugGCCGCuu--GGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 28047 | 0.66 | 0.594019 |
Target: 5'- gUCGGGauaGCGcgagucacccUCGGCGCUGGCGAcCUCGc -3' miRNA: 3'- -AGUCC---UGC----------AGCUGUGGCCGCUuGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 26330 | 0.66 | 0.582233 |
Target: 5'- aUCAGcauugcgguagccGACGUCaGCACCGGauaGAACCa- -3' miRNA: 3'- -AGUC-------------CUGCAGcUGUGGCCg--CUUGGgu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 19476 | 0.67 | 0.576891 |
Target: 5'- gCAGGACGUCGucgagcacguACgucuugacggccaucGCCGaGCGGGCCUc -3' miRNA: 3'- aGUCCUGCAGC----------UG---------------UGGC-CGCUUGGGu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 1484 | 0.67 | 0.572625 |
Target: 5'- cCAGGGCGUCGACGu---CGAGCaCCAg -3' miRNA: 3'- aGUCCUGCAGCUGUggccGCUUG-GGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 3835 | 0.67 | 0.572625 |
Target: 5'- gUCAGGGCGgcgcgguaggCGGCGCCGaCG-AUCCGg -3' miRNA: 3'- -AGUCCUGCa---------GCUGUGGCcGCuUGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 30129 | 0.67 | 0.561995 |
Target: 5'- --uGGGCGaguaGACGauGGCGAACCCGc -3' miRNA: 3'- aguCCUGCag--CUGUggCCGCUUGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 23042 | 0.67 | 0.539855 |
Target: 5'- cUCGGccacgucGACGUCGACGUCGGCGAGgCg- -3' miRNA: 3'- -AGUC-------CUGCAGCUGUGGCCGCUUgGgu -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 39127 | 0.67 | 0.537762 |
Target: 5'- gCGGGGCugccaGACugCGGCGAccagccgacguccuGCCCGu -3' miRNA: 3'- aGUCCUGcag--CUGugGCCGCU--------------UGGGU- -5' |
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12774 | 3' | -57.4 | NC_003387.1 | + | 44390 | 0.68 | 0.499587 |
Target: 5'- gUCGGGGuCGUCGAgGUCGGCcGGGCCg- -3' miRNA: 3'- -AGUCCU-GCAGCUgUGGCCG-CUUGGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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