miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 9355 0.8 0.080383
Target:  5'- cCAGGACGUCGACgaGCCGGUGGcgGCCgAg -3'
miRNA:   3'- aGUCCUGCAGCUG--UGGCCGCU--UGGgU- -5'
12774 3' -57.4 NC_003387.1 + 10333 0.67 0.540904
Target:  5'- aUCAGccgcGGCGUCGAUA-CGGCcGACCCc -3'
miRNA:   3'- -AGUC----CUGCAGCUGUgGCCGcUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 10437 0.66 0.594019
Target:  5'- gUCGGGGCGaaauagUCGcacguaGCugCGGCGuguuCCCAg -3'
miRNA:   3'- -AGUCCUGC------AGC------UGugGCCGCuu--GGGU- -5'
12774 3' -57.4 NC_003387.1 + 10511 0.7 0.394328
Target:  5'- gCGGGGCGcUCGGC-UCGGCGAugCgGg -3'
miRNA:   3'- aGUCCUGC-AGCUGuGGCCGCUugGgU- -5'
12774 3' -57.4 NC_003387.1 + 10791 0.68 0.499587
Target:  5'- gUCGGGuCGUCGGCGUCGGCGGcACaCGg -3'
miRNA:   3'- -AGUCCuGCAGCUGUGGCCGCU-UGgGU- -5'
12774 3' -57.4 NC_003387.1 + 11273 0.7 0.4033
Target:  5'- gUCAGGGCGgCGucagggccGCGCCGGUGAcCUCGg -3'
miRNA:   3'- -AGUCCUGCaGC--------UGUGGCCGCUuGGGU- -5'
12774 3' -57.4 NC_003387.1 + 11374 0.67 0.530457
Target:  5'- cCGGGuCGUCGuUugCGGCGAucgGCgCCAc -3'
miRNA:   3'- aGUCCuGCAGCuGugGCCGCU---UG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 12842 0.74 0.231271
Target:  5'- -aAGGGCGgCGuggacaccGCACCGGCGGGCCUg -3'
miRNA:   3'- agUCCUGCaGC--------UGUGGCCGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 13581 0.71 0.30899
Target:  5'- gCAGGACGUCGGCuggucgccgcaguCUGGC-AGCCCc -3'
miRNA:   3'- aGUCCUGCAGCUGu------------GGCCGcUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 14190 0.67 0.551418
Target:  5'- -gAGGGCGUCGugAUggCGcGCGAGCUUg -3'
miRNA:   3'- agUCCUGCAGCugUG--GC-CGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 14737 0.66 0.603691
Target:  5'- uUCAGGACGgcaUCGAgGgCCGGaUGGucaagcuGCCCAa -3'
miRNA:   3'- -AGUCCUGC---AGCUgU-GGCC-GCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 15642 0.66 0.604767
Target:  5'- aCGGcGAgGUCGACcaugUCGGCGAacgaauGCCCGc -3'
miRNA:   3'- aGUC-CUgCAGCUGu---GGCCGCU------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 15689 0.66 0.626321
Target:  5'- aUCccGGCG-CGugGCuCGGCGAGgCCAg -3'
miRNA:   3'- -AGucCUGCaGCugUG-GCCGCUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 16061 0.68 0.459729
Target:  5'- cCAGGuCGgCGA-GCCGGUGAugCCAc -3'
miRNA:   3'- aGUCCuGCaGCUgUGGCCGCUugGGU- -5'
12774 3' -57.4 NC_003387.1 + 17121 0.66 0.614459
Target:  5'- -gGGGGCGacgcucgacgaccUCGACcggcugucACCGGCG-GCCCGc -3'
miRNA:   3'- agUCCUGC-------------AGCUG--------UGGCCGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 17271 0.68 0.47647
Target:  5'- cCAGuucGACGaCGACcccgacagcuaacaGCCGGCGAAUCCGc -3'
miRNA:   3'- aGUC---CUGCaGCUG--------------UGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18209 0.75 0.192308
Target:  5'- cUCGGcGACG-CGACgACCGGCGAccuggucGCCCGc -3'
miRNA:   3'- -AGUC-CUGCaGCUG-UGGCCGCU-------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 18608 0.67 0.572625
Target:  5'- cCGcGACGUCGACGCCGcCGAucuGCCg- -3'
miRNA:   3'- aGUcCUGCAGCUGUGGCcGCU---UGGgu -5'
12774 3' -57.4 NC_003387.1 + 18935 0.69 0.4124
Target:  5'- aUCGGG-UGUCGGCACCaGCcGGGCCa- -3'
miRNA:   3'- -AGUCCuGCAGCUGUGGcCG-CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 18963 0.68 0.459729
Target:  5'- cUCGGuuuCGUCGGCAccCCGGCGAGCaUCGa -3'
miRNA:   3'- -AGUCcu-GCAGCUGU--GGCCGCUUG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.