miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 52078 0.69 0.4124
Target:  5'- uUCAucGGGCGUCGcugccGCGgCGGCGAcgcuGCCCu -3'
miRNA:   3'- -AGU--CCUGCAGC-----UGUgGCCGCU----UGGGu -5'
12774 3' -57.4 NC_003387.1 + 51590 1.09 0.000724
Target:  5'- aUCAGGACGUCGACACCGGCGAACCCAc -3'
miRNA:   3'- -AGUCCUGCAGCUGUGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 51435 0.69 0.449066
Target:  5'- cCAGGGCGUCGAggcgcauCACCG-UGAACaCCu -3'
miRNA:   3'- aGUCCUGCAGCU-------GUGGCcGCUUG-GGu -5'
12774 3' -57.4 NC_003387.1 + 48878 0.68 0.499587
Target:  5'- --cGGAuCGUCGGCGCCGccuaccGCGcGCCCu -3'
miRNA:   3'- aguCCU-GCAGCUGUGGC------CGCuUGGGu -5'
12774 3' -57.4 NC_003387.1 + 47934 0.66 0.615537
Target:  5'- gCAGGcAUGggcaCGACGCCGuGUGGGCCgCGa -3'
miRNA:   3'- aGUCC-UGCa---GCUGUGGC-CGCUUGG-GU- -5'
12774 3' -57.4 NC_003387.1 + 47201 0.66 0.583303
Target:  5'- cUCAGGugGccgccggugUCGGCAUugUGGUGGGCCUc -3'
miRNA:   3'- -AGUCCugC---------AGCUGUG--GCCGCUUGGGu -5'
12774 3' -57.4 NC_003387.1 + 46868 0.76 0.164428
Target:  5'- cCAGGACGguugCGGCGCCcccaccugcGGCGcAGCCCGg -3'
miRNA:   3'- aGUCCUGCa---GCUGUGG---------CCGC-UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 45356 0.66 0.626321
Target:  5'- cUCAGGcgacGCGcUCGAguuuuUGCCGGCGGuuagcugcGCCCGg -3'
miRNA:   3'- -AGUCC----UGC-AGCU-----GUGGCCGCU--------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 45160 0.67 0.561995
Target:  5'- -gAGGugGUCGcgugagcagGCACCGGCaaGAggaucggguguuGCCCGg -3'
miRNA:   3'- agUCCugCAGC---------UGUGGCCG--CU------------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 45105 0.69 0.430974
Target:  5'- cCAGGuCGUCGACGCC-GCGGugUa- -3'
miRNA:   3'- aGUCCuGCAGCUGUGGcCGCUugGgu -5'
12774 3' -57.4 NC_003387.1 + 44390 0.68 0.499587
Target:  5'- gUCGGGGuCGUCGAgGUCGGCcGGGCCg- -3'
miRNA:   3'- -AGUCCU-GCAGCUgUGGCCG-CUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 43942 0.66 0.583303
Target:  5'- aUCAGGucgccCGcCGcCGCaCGGCGAagGCCCGc -3'
miRNA:   3'- -AGUCCu----GCaGCuGUG-GCCGCU--UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 43776 0.66 0.583303
Target:  5'- cCAGGACGacaccaGG-ACCGGCGucGCCCGc -3'
miRNA:   3'- aGUCCUGCag----CUgUGGCCGCu-UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 43716 0.66 0.63711
Target:  5'- cCAGG-UGcUCGACGgCGGCaugcggGAGCCCGc -3'
miRNA:   3'- aGUCCuGC-AGCUGUgGCCG------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 43156 0.68 0.489473
Target:  5'- aCAGGuGCG-CG-UGCUGGCGAAUCCAc -3'
miRNA:   3'- aGUCC-UGCaGCuGUGGCCGCUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 42804 0.66 0.615537
Target:  5'- gUAGGGCGUCGAuCACgUGuGCGAGCa-- -3'
miRNA:   3'- aGUCCUGCAGCU-GUG-GC-CGCUUGggu -5'
12774 3' -57.4 NC_003387.1 + 42214 0.66 0.594019
Target:  5'- gCAGGACGgCGA--CCGGCGcACCgCGa -3'
miRNA:   3'- aGUCCUGCaGCUguGGCCGCuUGG-GU- -5'
12774 3' -57.4 NC_003387.1 + 41654 0.66 0.619849
Target:  5'- gCGGuACGUCGACGacugcgaccugugguUCGGCGucAACCCGa -3'
miRNA:   3'- aGUCcUGCAGCUGU---------------GGCCGC--UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 40418 0.66 0.604767
Target:  5'- ----uACGUCGGCGaCGGCGAACCg- -3'
miRNA:   3'- aguccUGCAGCUGUgGCCGCUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 40112 0.66 0.623085
Target:  5'- gCAGG-CGgCGGC-CCGGCGucgggcaaguucaaGGCCCAc -3'
miRNA:   3'- aGUCCuGCaGCUGuGGCCGC--------------UUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.