miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 3' -57.4 NC_003387.1 + 23843 0.66 0.63711
Target:  5'- cCGGGAC-UCGGCGCCGugccgcucGCGGuaccaguccgACCCGc -3'
miRNA:   3'- aGUCCUGcAGCUGUGGC--------CGCU----------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 43716 0.66 0.63711
Target:  5'- cCAGG-UGcUCGACGgCGGCaugcggGAGCCCGc -3'
miRNA:   3'- aGUCCuGC-AGCUGUgGCCG------CUUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 6861 0.66 0.630636
Target:  5'- cUCAGGGCGccaacaagacgccggUCGccgucgugGCACCGGCu-GCCUAg -3'
miRNA:   3'- -AGUCCUGC---------------AGC--------UGUGGCCGcuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 3878 0.66 0.626321
Target:  5'- cCAGGGCGUgcACGCCGuGCGucGCgCCGa -3'
miRNA:   3'- aGUCCUGCAgcUGUGGC-CGCu-UG-GGU- -5'
12774 3' -57.4 NC_003387.1 + 15689 0.66 0.626321
Target:  5'- aUCccGGCG-CGugGCuCGGCGAGgCCAg -3'
miRNA:   3'- -AGucCUGCaGCugUG-GCCGCUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 45356 0.66 0.626321
Target:  5'- cUCAGGcgacGCGcUCGAguuuuUGCCGGCGGuuagcugcGCCCGg -3'
miRNA:   3'- -AGUCC----UGC-AGCU-----GUGGCCGCU--------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 31048 0.66 0.626321
Target:  5'- cCAGGGCGUCGGCGaacacgugcUCGGCc-GCCg- -3'
miRNA:   3'- aGUCCUGCAGCUGU---------GGCCGcuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 3415 0.66 0.626321
Target:  5'- cUCGGGGCcgugcccUCGGCGugcUCGGCGAGCaCCu -3'
miRNA:   3'- -AGUCCUGc------AGCUGU---GGCCGCUUG-GGu -5'
12774 3' -57.4 NC_003387.1 + 40112 0.66 0.623085
Target:  5'- gCAGG-CGgCGGC-CCGGCGucgggcaaguucaaGGCCCAc -3'
miRNA:   3'- aGUCCuGCaGCUGuGGCCGC--------------UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 41654 0.66 0.619849
Target:  5'- gCGGuACGUCGACGacugcgaccugugguUCGGCGucAACCCGa -3'
miRNA:   3'- aGUCcUGCAGCUGU---------------GGCCGC--UUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 21842 0.66 0.615537
Target:  5'- gCAGcG-UGUgGACACCGGCGcACCa- -3'
miRNA:   3'- aGUC-CuGCAgCUGUGGCCGCuUGGgu -5'
12774 3' -57.4 NC_003387.1 + 42804 0.66 0.615537
Target:  5'- gUAGGGCGUCGAuCACgUGuGCGAGCa-- -3'
miRNA:   3'- aGUCCUGCAGCU-GUG-GC-CGCUUGggu -5'
12774 3' -57.4 NC_003387.1 + 47934 0.66 0.615537
Target:  5'- gCAGGcAUGggcaCGACGCCGuGUGGGCCgCGa -3'
miRNA:   3'- aGUCC-UGCa---GCUGUGGC-CGCUUGG-GU- -5'
12774 3' -57.4 NC_003387.1 + 39219 0.66 0.615537
Target:  5'- gUCGGGcagugggaGCGgguacCGGCGCCGGgCGAGgCCGu -3'
miRNA:   3'- -AGUCC--------UGCa----GCUGUGGCC-GCUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 17121 0.66 0.614459
Target:  5'- -gGGGGCGacgcucgacgaccUCGACcggcugucACCGGCG-GCCCGc -3'
miRNA:   3'- agUCCUGC-------------AGCUG--------UGGCCGCuUGGGU- -5'
12774 3' -57.4 NC_003387.1 + 15642 0.66 0.604767
Target:  5'- aCGGcGAgGUCGACcaugUCGGCGAacgaauGCCCGc -3'
miRNA:   3'- aGUC-CUgCAGCUGu---GGCCGCU------UGGGU- -5'
12774 3' -57.4 NC_003387.1 + 5508 0.66 0.604767
Target:  5'- -gAGGcccaccacaAUGcCGACACCGGCGGccACCUg -3'
miRNA:   3'- agUCC---------UGCaGCUGUGGCCGCU--UGGGu -5'
12774 3' -57.4 NC_003387.1 + 40418 0.66 0.604767
Target:  5'- ----uACGUCGGCGaCGGCGAACCg- -3'
miRNA:   3'- aguccUGCAGCUGUgGCCGCUUGGgu -5'
12774 3' -57.4 NC_003387.1 + 21580 0.66 0.604767
Target:  5'- cCAGGcGCG-CGGCAUCaGCGAGgCCGa -3'
miRNA:   3'- aGUCC-UGCaGCUGUGGcCGCUUgGGU- -5'
12774 3' -57.4 NC_003387.1 + 14737 0.66 0.603691
Target:  5'- uUCAGGACGgcaUCGAgGgCCGGaUGGucaagcuGCCCAa -3'
miRNA:   3'- -AGUCCUGC---AGCUgU-GGCC-GCU-------UGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.