miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 5' -61 NC_003387.1 + 19452 0.69 0.267783
Target:  5'- gCCGUGCgggcgcgugucagUGUGGGCGCCGAggccaccGCGGGc -3'
miRNA:   3'- gGGCGCGa------------GCGCCCGUGGCU-------UGUCCu -5'
12774 5' -61 NC_003387.1 + 51578 0.72 0.181297
Target:  5'- aCCGCGCaugcaCGCaGGCGCCGAGCAc-- -3'
miRNA:   3'- gGGCGCGa----GCGcCCGUGGCUUGUccu -5'
12774 5' -61 NC_003387.1 + 29303 0.66 0.456946
Target:  5'- cCCCG-GCgacCGCGGGCA-CGAGCgccAGGc -3'
miRNA:   3'- -GGGCgCGa--GCGCCCGUgGCUUG---UCCu -5'
12774 5' -61 NC_003387.1 + 9425 0.67 0.402043
Target:  5'- gCCGaCGaguacgaCGCGGGCGCCGAGCu--- -3'
miRNA:   3'- gGGC-GCga-----GCGCCCGUGGCUUGuccu -5'
12774 5' -61 NC_003387.1 + 42182 0.68 0.327997
Target:  5'- aCCgaGCGcCUCaacgagGCGGGCguGCgCGAGCAGGAc -3'
miRNA:   3'- -GGg-CGC-GAG------CGCCCG--UG-GCUUGUCCU- -5'
12774 5' -61 NC_003387.1 + 29439 0.73 0.151027
Target:  5'- gCCCGCGCggucgcuauccUCGCGaucgagaacGGCGCCagcGAGCAGGGc -3'
miRNA:   3'- -GGGCGCG-----------AGCGC---------CCGUGG---CUUGUCCU- -5'
12774 5' -61 NC_003387.1 + 12468 0.67 0.393306
Target:  5'- gCCUG-GC-CGCGGGCcuggcguCCGAGCAGa- -3'
miRNA:   3'- -GGGCgCGaGCGCCCGu------GGCUUGUCcu -5'
12774 5' -61 NC_003387.1 + 40499 0.76 0.094986
Target:  5'- gCUGCGCUgGCGaccgccgguggcccGGCACCGAGCAGcGAc -3'
miRNA:   3'- gGGCGCGAgCGC--------------CCGUGGCUUGUC-CU- -5'
12774 5' -61 NC_003387.1 + 47642 0.76 0.088246
Target:  5'- gCCCGCGaCUaGCGGGCcUCGGGCAGGu -3'
miRNA:   3'- -GGGCGC-GAgCGCCCGuGGCUUGUCCu -5'
12774 5' -61 NC_003387.1 + 34433 0.68 0.335705
Target:  5'- uCCUGCGCagcaaaCGCagccGGGCcuGCCGAAguGGAu -3'
miRNA:   3'- -GGGCGCGa-----GCG----CCCG--UGGCUUguCCU- -5'
12774 5' -61 NC_003387.1 + 19401 0.66 0.447513
Target:  5'- aCCGgGUggaaggacgUCGCGGGCacuuacACCGucccACAGGGc -3'
miRNA:   3'- gGGCgCG---------AGCGCCCG------UGGCu---UGUCCU- -5'
12774 5' -61 NC_003387.1 + 39212 0.7 0.239687
Target:  5'- cCCCGCGgUCgggcagugggaGCGGGUACCGGcgcCGGGc -3'
miRNA:   3'- -GGGCGCgAG-----------CGCCCGUGGCUu--GUCCu -5'
12774 5' -61 NC_003387.1 + 2708 0.71 0.222355
Target:  5'- gUUGUGCUcggcgaCGCGGGCGgCGGGCAGGc -3'
miRNA:   3'- gGGCGCGA------GCGCCCGUgGCUUGUCCu -5'
12774 5' -61 NC_003387.1 + 46921 0.67 0.367848
Target:  5'- gCCGCacGCUUGagcCGGGCACCGAggugucgauccGCGGcGAg -3'
miRNA:   3'- gGGCG--CGAGC---GCCCGUGGCU-----------UGUC-CU- -5'
12774 5' -61 NC_003387.1 + 44799 0.67 0.402043
Target:  5'- gCCCGCGCgauccUCGaCGGGCugACCGAcgucguguGGAu -3'
miRNA:   3'- -GGGCGCG-----AGC-GCCCG--UGGCUugu-----CCU- -5'
12774 5' -61 NC_003387.1 + 8983 0.67 0.401163
Target:  5'- gCCGCcaacacGCUCGCGGGCucccgcauGCCGccgucgagcaccuGGCGGGc -3'
miRNA:   3'- gGGCG------CGAGCGCCCG--------UGGC-------------UUGUCCu -5'
12774 5' -61 NC_003387.1 + 6892 0.67 0.402043
Target:  5'- cUCCGCgGCgucgUCGCGGGCcaucaGCC--GCGGGAc -3'
miRNA:   3'- -GGGCG-CG----AGCGCCCG-----UGGcuUGUCCU- -5'
12774 5' -61 NC_003387.1 + 15540 0.69 0.305662
Target:  5'- -aCGCGCUCG-GGGUGCCGGGCc--- -3'
miRNA:   3'- ggGCGCGAGCgCCCGUGGCUUGuccu -5'
12774 5' -61 NC_003387.1 + 20116 0.68 0.32042
Target:  5'- cCCCGCG---GCGaGC-CCGAGCAGGAu -3'
miRNA:   3'- -GGGCGCgagCGCcCGuGGCUUGUCCU- -5'
12774 5' -61 NC_003387.1 + 15 0.68 0.32042
Target:  5'- gCCGCGaucguUCGCgGGGCACCccccCAGGGg -3'
miRNA:   3'- gGGCGCg----AGCG-CCCGUGGcuu-GUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.