miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 5' -61 NC_003387.1 + 47642 0.76 0.088246
Target:  5'- gCCCGCGaCUaGCGGGCcUCGGGCAGGu -3'
miRNA:   3'- -GGGCGC-GAgCGCCCGuGGCUUGUCCu -5'
12774 5' -61 NC_003387.1 + 42182 0.68 0.327997
Target:  5'- aCCgaGCGcCUCaacgagGCGGGCguGCgCGAGCAGGAc -3'
miRNA:   3'- -GGg-CGC-GAG------CGCCCG--UG-GCUUGUCCU- -5'
12774 5' -61 NC_003387.1 + 30708 0.68 0.343545
Target:  5'- uCgUGCGCcUGCGGGgcgcucaGCCGGGCAGGu -3'
miRNA:   3'- -GgGCGCGaGCGCCCg------UGGCUUGUCCu -5'
12774 5' -61 NC_003387.1 + 29303 0.66 0.456946
Target:  5'- cCCCG-GCgacCGCGGGCA-CGAGCgccAGGc -3'
miRNA:   3'- -GGGCgCGa--GCGCCCGUgGCUUG---UCCu -5'
12774 5' -61 NC_003387.1 + 2708 0.71 0.222355
Target:  5'- gUUGUGCUcggcgaCGCGGGCGgCGGGCAGGc -3'
miRNA:   3'- gGGCGCGA------GCGCCCGUgGCUUGUCCu -5'
12774 5' -61 NC_003387.1 + 13538 0.7 0.22687
Target:  5'- gCCUGgGCUCGCuguucaagggccuGGGCAgcCCGAucgacggGCAGGAc -3'
miRNA:   3'- -GGGCgCGAGCG-------------CCCGU--GGCU-------UGUCCU- -5'
12774 5' -61 NC_003387.1 + 39212 0.7 0.239687
Target:  5'- cCCCGCGgUCgggcagugggaGCGGGUACCGGcgcCGGGc -3'
miRNA:   3'- -GGGCGCgAG-----------CGCCCGUGGCUu--GUCCu -5'
12774 5' -61 NC_003387.1 + 8530 0.7 0.258133
Target:  5'- aCCG-GCUCGCGGGUAguuaguugcCCGcGCGGGc -3'
miRNA:   3'- gGGCgCGAGCGCCCGU---------GGCuUGUCCu -5'
12774 5' -61 NC_003387.1 + 30742 0.69 0.271064
Target:  5'- aCCCG-GCUCGuCGGGCagcACCGuguCGGGc -3'
miRNA:   3'- -GGGCgCGAGC-GCCCG---UGGCuu-GUCCu -5'
12774 5' -61 NC_003387.1 + 17161 0.68 0.312975
Target:  5'- gCCCGCGCUgaGCuGGuGCGCCGccugGGCGGcGAc -3'
miRNA:   3'- -GGGCGCGAg-CG-CC-CGUGGC----UUGUC-CU- -5'
12774 5' -61 NC_003387.1 + 24726 0.69 0.291431
Target:  5'- gCgCGUGCUCGCcgaaaucgaGGGCGCCGcAACGGc- -3'
miRNA:   3'- -GgGCGCGAGCG---------CCCGUGGC-UUGUCcu -5'
12774 5' -61 NC_003387.1 + 19452 0.69 0.267783
Target:  5'- gCCGUGCgggcgcgugucagUGUGGGCGCCGAggccaccGCGGGc -3'
miRNA:   3'- gGGCGCGa------------GCGCCCGUGGCU-------UGUCCu -5'
12774 5' -61 NC_003387.1 + 40499 0.76 0.094986
Target:  5'- gCUGCGCUgGCGaccgccgguggcccGGCACCGAGCAGcGAc -3'
miRNA:   3'- gGGCGCGAgCGC--------------CCGUGGCUUGUC-CU- -5'
12774 5' -61 NC_003387.1 + 16962 0.69 0.299193
Target:  5'- uCCCGUGCUggcguuucaccuggCGCGGGCGggcugcgucaucgacCCcGAGCGGGc -3'
miRNA:   3'- -GGGCGCGA--------------GCGCCCGU---------------GG-CUUGUCCu -5'
12774 5' -61 NC_003387.1 + 29439 0.73 0.151027
Target:  5'- gCCCGCGCggucgcuauccUCGCGaucgagaacGGCGCCagcGAGCAGGGc -3'
miRNA:   3'- -GGGCGCG-----------AGCGC---------CCGUGG---CUUGUCCU- -5'
12774 5' -61 NC_003387.1 + 30171 0.7 0.258133
Target:  5'- gCCCGCGCgaUCGCcucGGGCaaggagcagucGCCGAGCcGGu -3'
miRNA:   3'- -GGGCGCG--AGCG---CCCG-----------UGGCUUGuCCu -5'
12774 5' -61 NC_003387.1 + 31053 0.68 0.312975
Target:  5'- aCCgGCGC-CGauGGCACCGGcgACGGcGAg -3'
miRNA:   3'- -GGgCGCGaGCgcCCGUGGCU--UGUC-CU- -5'
12774 5' -61 NC_003387.1 + 34433 0.68 0.335705
Target:  5'- uCCUGCGCagcaaaCGCagccGGGCcuGCCGAAguGGAu -3'
miRNA:   3'- -GGGCGCGa-----GCG----CCCG--UGGCUUguCCU- -5'
12774 5' -61 NC_003387.1 + 51578 0.72 0.181297
Target:  5'- aCCGCGCaugcaCGCaGGCGCCGAGCAc-- -3'
miRNA:   3'- gGGCGCGa----GCGcCCGUGGCUUGUccu -5'
12774 5' -61 NC_003387.1 + 45591 0.7 0.233788
Target:  5'- gCCGgGcCUCGCGuGGCugaucgACCGGcuGCAGGAg -3'
miRNA:   3'- gGGCgC-GAGCGC-CCG------UGGCU--UGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.