miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 5' -61 NC_003387.1 + 15 0.68 0.32042
Target:  5'- gCCGCGaucguUCGCgGGGCACCccccCAGGGg -3'
miRNA:   3'- gGGCGCg----AGCG-CCCGUGGcuu-GUCCU- -5'
12774 5' -61 NC_003387.1 + 983 0.66 0.447513
Target:  5'- gCCGcCGC-CGa-GGCGCCGAcCGGGGu -3'
miRNA:   3'- gGGC-GCGaGCgcCCGUGGCUuGUCCU- -5'
12774 5' -61 NC_003387.1 + 1107 0.66 0.456946
Target:  5'- gCCCGCGagCGCGGGUucgGCCGu---GGGu -3'
miRNA:   3'- -GGGCGCgaGCGCCCG---UGGCuuguCCU- -5'
12774 5' -61 NC_003387.1 + 1401 0.7 0.2575
Target:  5'- gUCGCGCUCgaaguuguGCGaGGCGCCGccgccgacgagcuGGCAGGGc -3'
miRNA:   3'- gGGCGCGAG--------CGC-CCGUGGC-------------UUGUCCU- -5'
12774 5' -61 NC_003387.1 + 1950 0.68 0.343545
Target:  5'- aUCCG-GC-CGCGGGUcugGCCGGGCAGc- -3'
miRNA:   3'- -GGGCgCGaGCGCCCG---UGGCUUGUCcu -5'
12774 5' -61 NC_003387.1 + 2708 0.71 0.222355
Target:  5'- gUUGUGCUcggcgaCGCGGGCGgCGGGCAGGc -3'
miRNA:   3'- gGGCGCGA------GCGCCCGUgGCUUGUCCu -5'
12774 5' -61 NC_003387.1 + 3572 0.67 0.38384
Target:  5'- -gCGCGCUgGUGuGCACCGAcacguguACAGGc -3'
miRNA:   3'- ggGCGCGAgCGCcCGUGGCU-------UGUCCu -5'
12774 5' -61 NC_003387.1 + 4400 0.67 0.379587
Target:  5'- aCUCGCGCUCGC--GCGCCGccucgauuucgucgaGGCGGGc -3'
miRNA:   3'- -GGGCGCGAGCGccCGUGGC---------------UUGUCCu -5'
12774 5' -61 NC_003387.1 + 4530 0.72 0.172138
Target:  5'- gCCGcCGCcggUGCGGGCACCuuGCGGGc -3'
miRNA:   3'- gGGC-GCGa--GCGCCCGUGGcuUGUCCu -5'
12774 5' -61 NC_003387.1 + 4563 0.69 0.277051
Target:  5'- gCCUGCGCgaccgCGCGGGCcUCGGuggcgcgcugcgcGCGGGu -3'
miRNA:   3'- -GGGCGCGa----GCGCCCGuGGCU-------------UGUCCu -5'
12774 5' -61 NC_003387.1 + 5340 0.67 0.393306
Target:  5'- cCCCGCGCUUGCGGuGUcgguguugaGCUGucAACAGu- -3'
miRNA:   3'- -GGGCGCGAGCGCC-CG---------UGGC--UUGUCcu -5'
12774 5' -61 NC_003387.1 + 6043 0.69 0.277723
Target:  5'- --gGUGCg-GCaGGGCGCCGGGCAGGu -3'
miRNA:   3'- gggCGCGagCG-CCCGUGGCUUGUCCu -5'
12774 5' -61 NC_003387.1 + 6692 0.69 0.277723
Target:  5'- gCCGacaGCUCGCGGGUgaagAUCGGuguccguCAGGAc -3'
miRNA:   3'- gGGCg--CGAGCGCCCG----UGGCUu------GUCCU- -5'
12774 5' -61 NC_003387.1 + 6892 0.67 0.402043
Target:  5'- cUCCGCgGCgucgUCGCGGGCcaucaGCC--GCGGGAc -3'
miRNA:   3'- -GGGCG-CG----AGCGCCCG-----UGGcuUGUCCU- -5'
12774 5' -61 NC_003387.1 + 8530 0.7 0.258133
Target:  5'- aCCG-GCUCGCGGGUAguuaguugcCCGcGCGGGc -3'
miRNA:   3'- gGGCgCGAGCGCCCGU---------GGCuUGUCCu -5'
12774 5' -61 NC_003387.1 + 8983 0.67 0.401163
Target:  5'- gCCGCcaacacGCUCGCGGGCucccgcauGCCGccgucgagcaccuGGCGGGc -3'
miRNA:   3'- gGGCG------CGAGCGCCCG--------UGGC-------------UUGUCCu -5'
12774 5' -61 NC_003387.1 + 9107 0.72 0.172138
Target:  5'- gCUCGCGCU--CGGGCACuaugugcuCGAACGGGAu -3'
miRNA:   3'- -GGGCGCGAgcGCCCGUG--------GCUUGUCCU- -5'
12774 5' -61 NC_003387.1 + 9425 0.67 0.402043
Target:  5'- gCCGaCGaguacgaCGCGGGCGCCGAGCu--- -3'
miRNA:   3'- gGGC-GCga-----GCGCCCGUGGCUUGuccu -5'
12774 5' -61 NC_003387.1 + 9463 0.69 0.271064
Target:  5'- -aCGCuCUUGCcguuggacccGGCGCCGAACAGGAa -3'
miRNA:   3'- ggGCGcGAGCGc---------CCGUGGCUUGUCCU- -5'
12774 5' -61 NC_003387.1 + 10105 0.66 0.418977
Target:  5'- gCUCGgGCUgcaUGgGGGCgagggucACCGGGCGGGGc -3'
miRNA:   3'- -GGGCgCGA---GCgCCCG-------UGGCUUGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.