miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 11509 0.66 0.524515
Target:  5'- uGCCU-ACGaUCGUCGGCcugcguGUCGCCCuguucgcgcaccagGCCg -3'
miRNA:   3'- -UGGGcUGC-AGCAGCUG------CAGCGGG--------------CGG- -5'
12775 3' -60.3 NC_003387.1 + 12320 0.66 0.468674
Target:  5'- -gCCGACGUagGUC-ACGUgcaGCUCGCCg -3'
miRNA:   3'- ugGGCUGCAg-CAGcUGCAg--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 12610 0.68 0.39585
Target:  5'- uGCCCGACGcCGg-GcCGcCGCCUGCg -3'
miRNA:   3'- -UGGGCUGCaGCagCuGCaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 12998 0.67 0.412485
Target:  5'- aGCUuaaGGCGUCGUCGGgcaagguCGacagCGCCCGCa -3'
miRNA:   3'- -UGGg--CUGCAGCAGCU-------GCa---GCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 13407 0.69 0.338428
Target:  5'- -gCCGACGguuaaGUCGGCGcUCGCCgGUg -3'
miRNA:   3'- ugGGCUGCag---CAGCUGC-AGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 13471 0.72 0.225091
Target:  5'- -gCCGAgGUCGaacUCGACGgccUCGCCCGgCg -3'
miRNA:   3'- ugGGCUgCAGC---AGCUGC---AGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 13639 0.71 0.242455
Target:  5'- aACCCGGCcacCGUCGGCGgcggcUCGgUCGCCg -3'
miRNA:   3'- -UGGGCUGca-GCAGCUGC-----AGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 14195 0.68 0.362278
Target:  5'- cACCaUGACGcCGUCGGCGcUCaCuuGCCg -3'
miRNA:   3'- -UGG-GCUGCaGCAGCUGC-AGcGggCGG- -5'
12775 3' -60.3 NC_003387.1 + 14397 0.67 0.44053
Target:  5'- gACUCGugGuggUCGUCGugGUCugagacuguGCCCGg- -3'
miRNA:   3'- -UGGGCugC---AGCAGCugCAG---------CGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 14897 0.69 0.330735
Target:  5'- uGCCCGACcUCGcUCGGCccgaUCGCgCGCUg -3'
miRNA:   3'- -UGGGCUGcAGC-AGCUGc---AGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 15009 0.66 0.468674
Target:  5'- cCUCGGCuuGUCGcgcgggUCGGCGUCGUCCGaCa -3'
miRNA:   3'- uGGGCUG--CAGC------AGCUGCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 15836 0.66 0.467721
Target:  5'- gACgCCGACGcggugccCGUCGGCGagcacaaUCGUCUGCUg -3'
miRNA:   3'- -UG-GGCUGCa------GCAGCUGC-------AGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 16318 0.7 0.308436
Target:  5'- aGCUCGGCGccggUGUCGAUGUUGaCCGCg -3'
miRNA:   3'- -UGGGCUGCa---GCAGCUGCAGCgGGCGg -5'
12775 3' -60.3 NC_003387.1 + 16725 0.68 0.38727
Target:  5'- gACCuCGcCGUCGaUCGugcccuCGUCGUcgCCGCCg -3'
miRNA:   3'- -UGG-GCuGCAGC-AGCu-----GCAGCG--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 17008 0.66 0.475373
Target:  5'- aGCUCGGucagcggcaggcCGUCGUCGcCGUacggcccccacacgUGCCCGCUc -3'
miRNA:   3'- -UGGGCU------------GCAGCAGCuGCA--------------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 17048 0.66 0.488913
Target:  5'- cGCCgGGCGUCGUCGAgGaCGCgaucgagugggucgaCGUCa -3'
miRNA:   3'- -UGGgCUGCAGCAGCUgCaGCGg--------------GCGG- -5'
12775 3' -60.3 NC_003387.1 + 17068 0.73 0.198502
Target:  5'- cGCCCGcgguCGagGUCGGCcagUGCCCGCCc -3'
miRNA:   3'- -UGGGCu---GCagCAGCUGca-GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 17463 0.67 0.42231
Target:  5'- uACCCGcggcgccaguUGUCGUCGGCGUacuugcgggCGCCgCgGCCg -3'
miRNA:   3'- -UGGGCu---------GCAGCAGCUGCA---------GCGG-G-CGG- -5'
12775 3' -60.3 NC_003387.1 + 17546 0.69 0.323172
Target:  5'- uAUCCGGuCGUacCGuUCGcGCGUCaGCCCGCCc -3'
miRNA:   3'- -UGGGCU-GCA--GC-AGC-UGCAG-CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 17740 0.67 0.449806
Target:  5'- aACCCGGC-UUGcCGACGggcaccagGCCCGCg -3'
miRNA:   3'- -UGGGCUGcAGCaGCUGCag------CGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.