miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 6690 0.67 0.413372
Target:  5'- cCUCGACGaCGcUCGGCGUCuuGCaCCGCg -3'
miRNA:   3'- uGGGCUGCaGC-AGCUGCAG--CG-GGCGg -5'
12775 3' -60.3 NC_003387.1 + 6893 0.69 0.323172
Target:  5'- uCCgCGGCGUCGUCG-CGg-GCCaucaGCCg -3'
miRNA:   3'- uGG-GCUGCAGCAGCuGCagCGGg---CGG- -5'
12775 3' -60.3 NC_003387.1 + 7449 0.74 0.170247
Target:  5'- cGCCCGACGggGUCGGCGUgGCgauccauuccagCCGCg -3'
miRNA:   3'- -UGGGCUGCagCAGCUGCAgCG------------GGCGg -5'
12775 3' -60.3 NC_003387.1 + 7620 0.69 0.338428
Target:  5'- cACCgCGGCGUCGaCGACc-UGgCCGCCg -3'
miRNA:   3'- -UGG-GCUGCAGCaGCUGcaGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 7813 0.66 0.497712
Target:  5'- aGCCCGGCGaCG-CGAuaCGgauaugcgCGCCCGgCg -3'
miRNA:   3'- -UGGGCUGCaGCaGCU--GCa-------GCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 7819 0.71 0.254642
Target:  5'- cGCCUGGCGgc--CGAgGUCGCCCGgCg -3'
miRNA:   3'- -UGGGCUGCagcaGCUgCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 7892 0.76 0.123995
Target:  5'- gACCUGGCuGUCGUCGAUccacacgacgucgGUCaGCCCGUCg -3'
miRNA:   3'- -UGGGCUG-CAGCAGCUG-------------CAG-CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 8123 0.69 0.315739
Target:  5'- gGCCCGACGgCGUCGcuCGacuccuugaggaUCGCCUuGCCc -3'
miRNA:   3'- -UGGGCUGCaGCAGCu-GC------------AGCGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 9024 0.69 0.322423
Target:  5'- cACCUGGCGggcgcCGUCGGCGauccacgccaggaUCGCgUCGCCc -3'
miRNA:   3'- -UGGGCUGCa----GCAGCUGC-------------AGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 9338 0.69 0.346249
Target:  5'- -gUCGACGUCGUCGAgcaccaggaCGUCGaCgaGCCg -3'
miRNA:   3'- ugGGCUGCAGCAGCU---------GCAGC-GggCGG- -5'
12775 3' -60.3 NC_003387.1 + 9407 0.66 0.50757
Target:  5'- uGCCCGGCGcugUGaUCGcguaGUCGCCCaGCa -3'
miRNA:   3'- -UGGGCUGCa--GC-AGCug--CAGCGGG-CGg -5'
12775 3' -60.3 NC_003387.1 + 9998 0.69 0.315739
Target:  5'- cGCCCuGACGagcagGUCGGCGUUGCCgGUa -3'
miRNA:   3'- -UGGG-CUGCag---CAGCUGCAGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 10663 0.66 0.48794
Target:  5'- gGCCuCGACG-CGgcugCGACcaCGgCCGCCu -3'
miRNA:   3'- -UGG-GCUGCaGCa---GCUGcaGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 10781 0.69 0.329973
Target:  5'- gGCCUGcaucgucGgGUCGUCGGCGUCGgCgGCa -3'
miRNA:   3'- -UGGGC-------UgCAGCAGCUGCAGCgGgCGg -5'
12775 3' -60.3 NC_003387.1 + 10954 0.71 0.248487
Target:  5'- cGCCCGGCuugaCGUCGAgGUCGCacacaCCGCg -3'
miRNA:   3'- -UGGGCUGca--GCAGCUgCAGCG-----GGCGg -5'
12775 3' -60.3 NC_003387.1 + 11015 0.73 0.183896
Target:  5'- cCCCGGCcgccuUCGUCGGCGcCGCgaCGCCg -3'
miRNA:   3'- uGGGCUGc----AGCAGCUGCaGCGg-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 11056 0.68 0.367186
Target:  5'- gACgCCGAaccacaggucgcaGUCGUCGACGUacCGCagCGCCu -3'
miRNA:   3'- -UG-GGCUg------------CAGCAGCUGCA--GCGg-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 11343 0.7 0.294218
Target:  5'- cGCCCGGCGcUCGgccucacgcUCGGCGUCgGCCUuGCa -3'
miRNA:   3'- -UGGGCUGC-AGC---------AGCUGCAG-CGGG-CGg -5'
12775 3' -60.3 NC_003387.1 + 11372 0.66 0.468674
Target:  5'- gGCCgGGuCGUCGUuugCGGCGaucggCGCCaCGCUg -3'
miRNA:   3'- -UGGgCU-GCAGCA---GCUGCa----GCGG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 11420 0.69 0.330735
Target:  5'- cCCCGAggugcUGUCGUCGGugcuCGU-GCCCGCg -3'
miRNA:   3'- uGGGCU-----GCAGCAGCU----GCAgCGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.