miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 36604 0.7 0.294218
Target:  5'- aACCCGGCGU--UCGAC-UCGCggcugcuggCCGCCg -3'
miRNA:   3'- -UGGGCUGCAgcAGCUGcAGCG---------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 29384 0.7 0.280516
Target:  5'- cGCCggUGACGaCcUCGAUcUCGCCCGCCg -3'
miRNA:   3'- -UGG--GCUGCaGcAGCUGcAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 41696 0.71 0.242455
Target:  5'- gACCCGGCGUCG-CGGCGcCGacgaaggCgGCCg -3'
miRNA:   3'- -UGGGCUGCAGCaGCUGCaGCg------GgCGG- -5'
12775 3' -60.3 NC_003387.1 + 37287 0.73 0.174693
Target:  5'- cGCCUGGCGcgcUCGUCGGCGcggucgUCGaCCgCGCCg -3'
miRNA:   3'- -UGGGCUGC---AGCAGCUGC------AGC-GG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 478 0.69 0.346249
Target:  5'- -aCCGGCGcgagcugcUCGUCGcgauGCG-CGCCCGCg -3'
miRNA:   3'- ugGGCUGC--------AGCAGC----UGCaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 49184 0.69 0.315739
Target:  5'- cGCaggCGGCGgcCGUCGACGUUgcugaGCCCGCa -3'
miRNA:   3'- -UGg--GCUGCa-GCAGCUGCAG-----CGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 49501 0.71 0.260921
Target:  5'- cGCCCGGCGUCGacgugUCgcaauggggcugGACGUCGCa-GCCc -3'
miRNA:   3'- -UGGGCUGCAGC-----AG------------CUGCAGCGggCGG- -5'
12775 3' -60.3 NC_003387.1 + 35806 0.74 0.165902
Target:  5'- uGCCuCGGCGcCGUCGGCG-CGaugcucucguacCCCGCCa -3'
miRNA:   3'- -UGG-GCUGCaGCAGCUGCaGC------------GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 30008 0.69 0.315739
Target:  5'- cGCCCGAC-UgGUCGGuaUCGCCCagGCCg -3'
miRNA:   3'- -UGGGCUGcAgCAGCUgcAGCGGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 1304 0.74 0.156286
Target:  5'- cGCCCuggcgggcGACGUCGaCGACGUCGgguacgucgagauuUCCGCCg -3'
miRNA:   3'- -UGGG--------CUGCAGCaGCUGCAGC--------------GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 51217 0.7 0.276506
Target:  5'- aGCCUGcACGUCGgccgcggccuggugcUCGACGUCGa-CGCCc -3'
miRNA:   3'- -UGGGC-UGCAGC---------------AGCUGCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31896 0.7 0.301262
Target:  5'- -gCCGACGUCGcgCGACGUauccCCUGCUc -3'
miRNA:   3'- ugGGCUGCAGCa-GCUGCAgc--GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 44733 0.71 0.254642
Target:  5'- cGCCCGGcCGgggCGcCGAagcgcagcaCGcCGCCCGCCg -3'
miRNA:   3'- -UGGGCU-GCa--GCaGCU---------GCaGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 24634 0.71 0.249097
Target:  5'- gACCCGACGcaccucgcccugcugCG-CGAgGUCGCCagCGCCg -3'
miRNA:   3'- -UGGGCUGCa--------------GCaGCUgCAGCGG--GCGG- -5'
12775 3' -60.3 NC_003387.1 + 37111 0.72 0.230759
Target:  5'- cCUCGACGUgcUCGACGUCGgCCggGCCg -3'
miRNA:   3'- uGGGCUGCAgcAGCUGCAGCgGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 18321 0.73 0.183896
Target:  5'- cGCCCGGCaacggCGUgGcCGUCguGCCCGCCg -3'
miRNA:   3'- -UGGGCUGca---GCAgCuGCAG--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 6599 0.68 0.362278
Target:  5'- aACCCGGUGUUccgCGACGacUCGUUCGCCg -3'
miRNA:   3'- -UGGGCUGCAGca-GCUGC--AGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 18604 0.69 0.353399
Target:  5'- cGCaCCG-CGaCGUCGACGcCGCcgaucugCCGCCg -3'
miRNA:   3'- -UG-GGCuGCaGCAGCUGCaGCG-------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 13407 0.69 0.338428
Target:  5'- -gCCGACGguuaaGUCGGCGcUCGCCgGUg -3'
miRNA:   3'- ugGGCUGCag---CAGCUGC-AGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 43774 0.69 0.323172
Target:  5'- uACCagGACGacaccaGgacCGGCGUCGCCCGCUu -3'
miRNA:   3'- -UGGg-CUGCag----Ca--GCUGCAGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.