miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 43688 0.79 0.076564
Target:  5'- uCCUGGCGuggaUCGcCGACGgCGCCCGCCa -3'
miRNA:   3'- uGGGCUGC----AGCaGCUGCaGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 49501 0.71 0.260921
Target:  5'- cGCCCGGCGUCGacgugUCgcaauggggcugGACGUCGCa-GCCc -3'
miRNA:   3'- -UGGGCUGCAGC-----AG------------CUGCAGCGggCGG- -5'
12775 3' -60.3 NC_003387.1 + 29384 0.7 0.280516
Target:  5'- cGCCggUGACGaCcUCGAUcUCGCCCGCCg -3'
miRNA:   3'- -UGG--GCUGCaGcAGCUGcAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 46653 0.66 0.527528
Target:  5'- cCCCGGCgGUCGUCaugguGCGcUCGaaCCUGCCc -3'
miRNA:   3'- uGGGCUG-CAGCAGc----UGC-AGC--GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 18321 0.73 0.183896
Target:  5'- cGCCCGGCaacggCGUgGcCGUCguGCCCGCCg -3'
miRNA:   3'- -UGGGCUGca---GCAgCuGCAG--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 28475 0.73 0.198502
Target:  5'- cCCCGAgGUCaagcUCGACGUCGUCgGCg -3'
miRNA:   3'- uGGGCUgCAGc---AGCUGCAGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 37111 0.72 0.230759
Target:  5'- cCUCGACGUgcUCGACGUCGgCCggGCCg -3'
miRNA:   3'- uGGGCUGCAgcAGCUGCAGCgGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 51508 0.71 0.234798
Target:  5'- aGCUCGACGagccaugcccCGUCGACGgccacccuugccccUgCGCCCGCCg -3'
miRNA:   3'- -UGGGCUGCa---------GCAGCUGC--------------A-GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 24634 0.71 0.249097
Target:  5'- gACCCGACGcaccucgcccugcugCG-CGAgGUCGCCagCGCCg -3'
miRNA:   3'- -UGGGCUGCa--------------GCaGCUgCAGCGG--GCGG- -5'
12775 3' -60.3 NC_003387.1 + 3734 0.71 0.256512
Target:  5'- gACCCGuaccugucgGCGUCGUCcaagcugacgacgcaGugGUacgccgagcagccCGCCCGCCa -3'
miRNA:   3'- -UGGGC---------UGCAGCAG---------------CugCA-------------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 29678 0.71 0.254642
Target:  5'- -gCCGACGUCGacgUCGACGUgGCCgagGUCg -3'
miRNA:   3'- ugGGCUGCAGC---AGCUGCAgCGGg--CGG- -5'
12775 3' -60.3 NC_003387.1 + 41696 0.71 0.242455
Target:  5'- gACCCGGCGUCG-CGGCGcCGacgaaggCgGCCg -3'
miRNA:   3'- -UGGGCUGCAGCaGCUGCaGCg------GgCGG- -5'
12775 3' -60.3 NC_003387.1 + 1304 0.74 0.156286
Target:  5'- cGCCCuggcgggcGACGUCGaCGACGUCGgguacgucgagauuUCCGCCg -3'
miRNA:   3'- -UGGG--------CUGCAGCaGCUGCAGC--------------GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 44733 0.71 0.254642
Target:  5'- cGCCCGGcCGgggCGcCGAagcgcagcaCGcCGCCCGCCg -3'
miRNA:   3'- -UGGGCU-GCa--GCaGCU---------GCaGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35806 0.74 0.165902
Target:  5'- uGCCuCGGCGcCGUCGGCG-CGaugcucucguacCCCGCCa -3'
miRNA:   3'- -UGG-GCUGCaGCAGCUGCaGC------------GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 13639 0.71 0.242455
Target:  5'- aACCCGGCcacCGUCGGCGgcggcUCGgUCGCCg -3'
miRNA:   3'- -UGGGCUGca-GCAGCUGC-----AGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 25268 0.71 0.254642
Target:  5'- -gCCGACGUCGcgCGuGCGcUCGaCCCGUCg -3'
miRNA:   3'- ugGGCUGCAGCa-GC-UGC-AGC-GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 51217 0.7 0.276506
Target:  5'- aGCCUGcACGUCGgccgcggccuggugcUCGACGUCGa-CGCCc -3'
miRNA:   3'- -UGGGC-UGCAGC---------------AGCUGCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 37287 0.73 0.174693
Target:  5'- cGCCUGGCGcgcUCGUCGGCGcggucgUCGaCCgCGCCg -3'
miRNA:   3'- -UGGGCUGC---AGCAGCUGC------AGC-GG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 33080 0.72 0.203591
Target:  5'- cGCCgCGAgCGUaacCG-CGUCGCCCGCCg -3'
miRNA:   3'- -UGG-GCU-GCAgcaGCuGCAGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.