miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 478 0.69 0.346249
Target:  5'- -aCCGGCGcgagcugcUCGUCGcgauGCG-CGCCCGCg -3'
miRNA:   3'- ugGGCUGC--------AGCAGC----UGCaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 658 0.67 0.412485
Target:  5'- cGCCCGAUGaaccauUCGaCGGCGacgcuuagcgaggUCGCgCGCCa -3'
miRNA:   3'- -UGGGCUGC------AGCaGCUGC-------------AGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 1296 0.66 0.517511
Target:  5'- -aCCGGCGcaguUCGaggCGGCGccgcaggCGCUCGCCg -3'
miRNA:   3'- ugGGCUGC----AGCa--GCUGCa------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 1304 0.74 0.156286
Target:  5'- cGCCCuggcgggcGACGUCGaCGACGUCGgguacgucgagauuUCCGCCg -3'
miRNA:   3'- -UGGG--------CUGCAGCaGCUGCAGC--------------GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 1447 0.68 0.39585
Target:  5'- gGCUCGGgGUCGUCGuccuCGUCGaggUCGUCg -3'
miRNA:   3'- -UGGGCUgCAGCAGCu---GCAGCg--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 1611 0.66 0.50757
Target:  5'- gGCCUGGCGauuUCgGUCGGCGcgUGCUgGCUg -3'
miRNA:   3'- -UGGGCUGC---AG-CAGCUGCa-GCGGgCGG- -5'
12775 3' -60.3 NC_003387.1 + 1761 0.67 0.413372
Target:  5'- aGCCCGGCGg---CGGCGcuggCGCCCGa- -3'
miRNA:   3'- -UGGGCUGCagcaGCUGCa---GCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 2269 0.72 0.219542
Target:  5'- -gCCGGgGUCGgcUCGACGUCGuCCuCGCUg -3'
miRNA:   3'- ugGGCUgCAGC--AGCUGCAGC-GG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 2323 0.73 0.188656
Target:  5'- cGCCCGACGUacaGcUCGGCGgugUCGaggCCGCCg -3'
miRNA:   3'- -UGGGCUGCAg--C-AGCUGC---AGCg--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 2846 0.69 0.323172
Target:  5'- gACgCCGACGacaugaUCGUCGGugagGUCGCcCCGCUg -3'
miRNA:   3'- -UG-GGCUGC------AGCAGCUg---CAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 3036 0.67 0.449806
Target:  5'- uCCCGAgGUgaaGgcgcaGGCGUuccCGCCCGCCu -3'
miRNA:   3'- uGGGCUgCAg--Cag---CUGCA---GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 3067 0.68 0.39585
Target:  5'- cGCuCCGACGUCGacccacUCGGgGccaaGCUCGCCg -3'
miRNA:   3'- -UG-GGCUGCAGC------AGCUgCag--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 3342 0.67 0.449806
Target:  5'- gGCCCGcucguuuggcGCgGUCGUCGACGgcaucaccaaGCUgGCCu -3'
miRNA:   3'- -UGGGC----------UG-CAGCAGCUGCag--------CGGgCGG- -5'
12775 3' -60.3 NC_003387.1 + 3482 0.7 0.280516
Target:  5'- cCCCGGCGUCGagcaGcCGcUCGgCCGCCu -3'
miRNA:   3'- uGGGCUGCAGCag--CuGC-AGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 3734 0.71 0.256512
Target:  5'- gACCCGuaccugucgGCGUCGUCcaagcugacgacgcaGugGUacgccgagcagccCGCCCGCCa -3'
miRNA:   3'- -UGGGC---------UGCAGCAG---------------CugCA-------------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 4926 0.68 0.377976
Target:  5'- uGCCCGGCGcggCGUCGcGCGUUGUcgaacgugacagaCCaGCCg -3'
miRNA:   3'- -UGGGCUGCa--GCAGC-UGCAGCG-------------GG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 5736 0.85 0.028266
Target:  5'- gGCCCG-CGcUCGUCGuCGUCGCCCGCa -3'
miRNA:   3'- -UGGGCuGC-AGCAGCuGCAGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 5980 0.71 0.267326
Target:  5'- gACCCGGCcgGUUGcCGcCGugcaucguccacUCGCCCGCCu -3'
miRNA:   3'- -UGGGCUG--CAGCaGCuGC------------AGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 6439 0.68 0.370483
Target:  5'- gGCCguCGAgGUCGUgggCGGCGUCGCCaacgaGUCc -3'
miRNA:   3'- -UGG--GCUgCAGCA---GCUGCAGCGGg----CGG- -5'
12775 3' -60.3 NC_003387.1 + 6599 0.68 0.362278
Target:  5'- aACCCGGUGUUccgCGACGacUCGUUCGCCg -3'
miRNA:   3'- -UGGGCUGCAGca-GCUGC--AGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.