miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 52256 0.69 0.330735
Target:  5'- aGCUCG-CGcCgGUCGcCGUCGgCCGCCg -3'
miRNA:   3'- -UGGGCuGCaG-CAGCuGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 51961 0.67 0.431364
Target:  5'- uGCCCGACGUCGcUGcCG-CGgUgGCCg -3'
miRNA:   3'- -UGGGCUGCAGCaGCuGCaGCgGgCGG- -5'
12775 3' -60.3 NC_003387.1 + 51778 0.66 0.517511
Target:  5'- cGCCCGACugGUgGcUgGGCGUCGaUCGCCc -3'
miRNA:   3'- -UGGGCUG--CAgC-AgCUGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 51508 0.71 0.234798
Target:  5'- aGCUCGACGagccaugcccCGUCGACGgccacccuugccccUgCGCCCGCCg -3'
miRNA:   3'- -UGGGCUGCa---------GCAGCUGC--------------A-GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 51410 1.11 0.000315
Target:  5'- uACCCGACGUCGUCGACGUCGCCCGCCa -3'
miRNA:   3'- -UGGGCUGCAGCAGCUGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 51296 0.68 0.39585
Target:  5'- aGCCCuGCcagcUCGUCGGCGgcggCGCCuCGCa -3'
miRNA:   3'- -UGGGcUGc---AGCAGCUGCa---GCGG-GCGg -5'
12775 3' -60.3 NC_003387.1 + 51217 0.7 0.276506
Target:  5'- aGCCUGcACGUCGgccgcggccuggugcUCGACGUCGa-CGCCc -3'
miRNA:   3'- -UGGGC-UGCAGC---------------AGCUGCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 50475 0.66 0.472496
Target:  5'- gGCCCgcGAgGUCGUCGGCaacuggcugacgcugGcCGCCUGaCCg -3'
miRNA:   3'- -UGGG--CUgCAGCAGCUG---------------CaGCGGGC-GG- -5'
12775 3' -60.3 NC_003387.1 + 50375 0.7 0.287303
Target:  5'- cGCUCGACGcCGaCGGCGgccUCGacaCCGCCg -3'
miRNA:   3'- -UGGGCUGCaGCaGCUGC---AGCg--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 50279 0.66 0.478259
Target:  5'- gGCCUGGCGcgCGUCcauGCgGUUGCgCUGCCa -3'
miRNA:   3'- -UGGGCUGCa-GCAGc--UG-CAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 49878 0.7 0.287303
Target:  5'- -aCCGACGaucaugUCGUCGGCGUgCGgCCGUUg -3'
miRNA:   3'- ugGGCUGC------AGCAGCUGCA-GCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 49556 0.68 0.404551
Target:  5'- cCCCGAuuaCGgccUCGcCGAgGUgCGCCCGCUg -3'
miRNA:   3'- uGGGCU---GC---AGCaGCUgCA-GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 49501 0.71 0.260921
Target:  5'- cGCCCGGCGUCGacgugUCgcaauggggcugGACGUCGCa-GCCc -3'
miRNA:   3'- -UGGGCUGCAGC-----AG------------CUGCAGCGggCGG- -5'
12775 3' -60.3 NC_003387.1 + 49184 0.69 0.315739
Target:  5'- cGCaggCGGCGgcCGUCGACGUUgcugaGCCCGCa -3'
miRNA:   3'- -UGg--GCUGCa-GCAGCUGCAG-----CGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 48903 0.66 0.468674
Target:  5'- cGCCCuGACGaUCGUUGuCG-CGCuuGCg -3'
miRNA:   3'- -UGGG-CUGC-AGCAGCuGCaGCGggCGg -5'
12775 3' -60.3 NC_003387.1 + 48875 0.68 0.404551
Target:  5'- aGCCgGA--UCGUCGGCGcCGCCUaCCg -3'
miRNA:   3'- -UGGgCUgcAGCAGCUGCaGCGGGcGG- -5'
12775 3' -60.3 NC_003387.1 + 48709 0.68 0.404551
Target:  5'- cGCuuGGCGUUGUCGAgcacCGUgCGCCg -3'
miRNA:   3'- -UGggCUGCAGCAGCUgca-GCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 48565 0.68 0.39585
Target:  5'- uGCCaGGCGUgCaUCGACGccCGCCuCGCCg -3'
miRNA:   3'- -UGGgCUGCA-GcAGCUGCa-GCGG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 48153 0.68 0.370483
Target:  5'- gGCCuCGGCGagcagcUUGUCGGCcuugucguaGUCGCCCGUUu -3'
miRNA:   3'- -UGG-GCUGC------AGCAGCUG---------CAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 48031 0.68 0.362278
Target:  5'- uGCUCGACGagguucagcaccUCGUcuugcuuggCGGCGUCGgCCGCUu -3'
miRNA:   3'- -UGGGCUGC------------AGCA---------GCUGCAGCgGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.