miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 46653 0.66 0.527528
Target:  5'- cCCCGGCgGUCGUCaugguGCGcUCGaaCCUGCCc -3'
miRNA:   3'- uGGGCUG-CAGCAGc----UGC-AGC--GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 44872 0.66 0.48794
Target:  5'- -gCCGuCGggggCGUCGGCGauucCGCCUGCg -3'
miRNA:   3'- ugGGCuGCa---GCAGCUGCa---GCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 50279 0.66 0.478259
Target:  5'- gGCCUGGCGcgCGUCcauGCgGUUGCgCUGCCa -3'
miRNA:   3'- -UGGGCUGCa-GCAGc--UG-CAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 44023 0.66 0.478259
Target:  5'- --gCGGC-UCGUCGACGUCGgUCGgCa -3'
miRNA:   3'- uggGCUGcAGCAGCUGCAGCgGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 35999 0.66 0.478259
Target:  5'- gACUCGGCGUCGUCGccgaucacgAgGUCGaaCGUCu -3'
miRNA:   3'- -UGGGCUGCAGCAGC---------UgCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 17008 0.66 0.475373
Target:  5'- aGCUCGGucagcggcaggcCGUCGUCGcCGUacggcccccacacgUGCCCGCUc -3'
miRNA:   3'- -UGGGCU------------GCAGCAGCuGCA--------------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 43371 0.66 0.468674
Target:  5'- -aCCGGC-UCGUCGACGUCcugguGCUCGaCg -3'
miRNA:   3'- ugGGCUGcAGCAGCUGCAG-----CGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 12320 0.66 0.468674
Target:  5'- -gCCGACGUagGUC-ACGUgcaGCUCGCCg -3'
miRNA:   3'- ugGGCUGCAg-CAGcUGCAg--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 15009 0.66 0.468674
Target:  5'- cCUCGGCuuGUCGcgcgggUCGGCGUCGUCCGaCa -3'
miRNA:   3'- uGGGCUG--CAGC------AGCUGCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 41773 0.66 0.493792
Target:  5'- cACCCGGCGgaaagucucagaGUCGAcCG-CGCCCuGCg -3'
miRNA:   3'- -UGGGCUGCag----------CAGCU-GCaGCGGG-CGg -5'
12775 3' -60.3 NC_003387.1 + 39502 0.66 0.497712
Target:  5'- uGCUCGGCGucggucagcuugUCGUUGACcUUGCCgCGCUu -3'
miRNA:   3'- -UGGGCUGC------------AGCAGCUGcAGCGG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 29007 0.66 0.497712
Target:  5'- uGCgCCGA-GUCGUUcgccgccugGGCGUUGCUCGCg -3'
miRNA:   3'- -UG-GGCUgCAGCAG---------CUGCAGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 1296 0.66 0.517511
Target:  5'- -aCCGGCGcaguUCGaggCGGCGccgcaggCGCUCGCCg -3'
miRNA:   3'- ugGGCUGC----AGCa--GCUGCa------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34145 0.66 0.515516
Target:  5'- aACUCGACGagcaccagGGCGUCGCCCucgGCCu -3'
miRNA:   3'- -UGGGCUGCagcag---CUGCAGCGGG---CGG- -5'
12775 3' -60.3 NC_003387.1 + 35318 0.66 0.50757
Target:  5'- aGCCUGACGgCGUCGcCGgUCGCgggaauuuCgGCCa -3'
miRNA:   3'- -UGGGCUGCaGCAGCuGC-AGCG--------GgCGG- -5'
12775 3' -60.3 NC_003387.1 + 45598 0.66 0.50757
Target:  5'- uACCCGACGaCGagauccguugccUCGGCGagcaGCUCGCUu -3'
miRNA:   3'- -UGGGCUGCaGC------------AGCUGCag--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 36147 0.66 0.50757
Target:  5'- uCCCGGCGUUGcCGcCGUUGCgCaCCu -3'
miRNA:   3'- uGGGCUGCAGCaGCuGCAGCGgGcGG- -5'
12775 3' -60.3 NC_003387.1 + 9407 0.66 0.50757
Target:  5'- uGCCCGGCGcugUGaUCGcguaGUCGCCCaGCa -3'
miRNA:   3'- -UGGGCUGCa--GC-AGCug--CAGCGGG-CGg -5'
12775 3' -60.3 NC_003387.1 + 7813 0.66 0.497712
Target:  5'- aGCCCGGCGaCG-CGAuaCGgauaugcgCGCCCGgCg -3'
miRNA:   3'- -UGGGCUGCaGCaGCU--GCa-------GCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 40676 0.66 0.497712
Target:  5'- cACgCCGGUGaacUUGUCGACGaUGCCCuGCCa -3'
miRNA:   3'- -UG-GGCUGC---AGCAGCUGCaGCGGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.