miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 31734 0.73 0.193032
Target:  5'- -gCCGACGagagcuaUCGcggcauucgCGGCGUUGCCCGCCc -3'
miRNA:   3'- ugGGCUGC-------AGCa--------GCUGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 28475 0.73 0.198502
Target:  5'- cCCCGAgGUCaagcUCGACGUCGUCgGCg -3'
miRNA:   3'- uGGGCUgCAGc---AGCUGCAGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 17068 0.73 0.198502
Target:  5'- cGCCCGcgguCGagGUCGGCcagUGCCCGCCc -3'
miRNA:   3'- -UGGGCu---GCagCAGCUGca-GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 24149 0.72 0.203591
Target:  5'- aGCuuGaggGCGUCGUCGACGgcgaUCGC-CGCCu -3'
miRNA:   3'- -UGggC---UGCAGCAGCUGC----AGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 33080 0.72 0.203591
Target:  5'- cGCCgCGAgCGUaacCG-CGUCGCCCGCCg -3'
miRNA:   3'- -UGG-GCU-GCAgcaGCuGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 2269 0.72 0.219542
Target:  5'- -gCCGGgGUCGgcUCGACGUCGuCCuCGCUg -3'
miRNA:   3'- ugGGCUgCAGC--AGCUGCAGC-GG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 35731 0.72 0.219542
Target:  5'- cGCUCGGgGUCGaUGACG-CaGCCCGCCc -3'
miRNA:   3'- -UGGGCUgCAGCaGCUGCaG-CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 38198 0.72 0.219542
Target:  5'- -aCCGA-GUUGUUGuCGUUGCCCGUCg -3'
miRNA:   3'- ugGGCUgCAGCAGCuGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 13471 0.72 0.225091
Target:  5'- -gCCGAgGUCGaacUCGACGgccUCGCCCGgCg -3'
miRNA:   3'- ugGGCUgCAGC---AGCUGC---AGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 37111 0.72 0.230759
Target:  5'- cCUCGACGUgcUCGACGUCGgCCggGCCg -3'
miRNA:   3'- uGGGCUGCAgcAGCUGCAGCgGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 51508 0.71 0.234798
Target:  5'- aGCUCGACGagccaugcccCGUCGACGgccacccuugccccUgCGCCCGCCg -3'
miRNA:   3'- -UGGGCUGCa---------GCAGCUGC--------------A-GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 39728 0.71 0.236547
Target:  5'- uGCCCGACGacgccuuaagcUCGUCGuCGgUGgCCGCCc -3'
miRNA:   3'- -UGGGCUGC-----------AGCAGCuGCaGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35668 0.71 0.242455
Target:  5'- cACUCGaucGCGUCcUCGACGaCGCCCGgCg -3'
miRNA:   3'- -UGGGC---UGCAGcAGCUGCaGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 41696 0.71 0.242455
Target:  5'- gACCCGGCGUCG-CGGCGcCGacgaaggCgGCCg -3'
miRNA:   3'- -UGGGCUGCAGCaGCUGCaGCg------GgCGG- -5'
12775 3' -60.3 NC_003387.1 + 13639 0.71 0.242455
Target:  5'- aACCCGGCcacCGUCGGCGgcggcUCGgUCGCCg -3'
miRNA:   3'- -UGGGCUGca-GCAGCUGC-----AGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 10954 0.71 0.248487
Target:  5'- cGCCCGGCuugaCGUCGAgGUCGCacacaCCGCg -3'
miRNA:   3'- -UGGGCUGca--GCAGCUgCAGCG-----GGCGg -5'
12775 3' -60.3 NC_003387.1 + 24634 0.71 0.249097
Target:  5'- gACCCGACGcaccucgcccugcugCG-CGAgGUCGCCagCGCCg -3'
miRNA:   3'- -UGGGCUGCa--------------GCaGCUgCAGCGG--GCGG- -5'
12775 3' -60.3 NC_003387.1 + 29678 0.71 0.254642
Target:  5'- -gCCGACGUCGacgUCGACGUgGCCgagGUCg -3'
miRNA:   3'- ugGGCUGCAGC---AGCUGCAgCGGg--CGG- -5'
12775 3' -60.3 NC_003387.1 + 7819 0.71 0.254642
Target:  5'- cGCCUGGCGgc--CGAgGUCGCCCGgCg -3'
miRNA:   3'- -UGGGCUGCagcaGCUgCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 44733 0.71 0.254642
Target:  5'- cGCCCGGcCGgggCGcCGAagcgcagcaCGcCGCCCGCCg -3'
miRNA:   3'- -UGGGCU-GCa--GCaGCU---------GCaGCGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.