miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 7813 0.66 0.497712
Target:  5'- aGCCCGGCGaCG-CGAuaCGgauaugcgCGCCCGgCg -3'
miRNA:   3'- -UGGGCUGCaGCaGCU--GCa-------GCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 33236 0.66 0.49673
Target:  5'- gGCCgucaaGACGUaCGUgcucgaCGACGUCcugcccgGCCUGCCg -3'
miRNA:   3'- -UGGg----CUGCA-GCA------GCUGCAG-------CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 37058 0.66 0.49673
Target:  5'- gGCCUGGCGagcgggcauucguUCGcCGACaugGUCGaCCuCGCCg -3'
miRNA:   3'- -UGGGCUGC-------------AGCaGCUG---CAGC-GG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 41773 0.66 0.493792
Target:  5'- cACCCGGCGgaaagucucagaGUCGAcCG-CGCCCuGCg -3'
miRNA:   3'- -UGGGCUGCag----------CAGCU-GCaGCGGG-CGg -5'
12775 3' -60.3 NC_003387.1 + 17048 0.66 0.488913
Target:  5'- cGCCgGGCGUCGUCGAgGaCGCgaucgagugggucgaCGUCa -3'
miRNA:   3'- -UGGgCUGCAGCAGCUgCaGCGg--------------GCGG- -5'
12775 3' -60.3 NC_003387.1 + 10663 0.66 0.48794
Target:  5'- gGCCuCGACG-CGgcugCGACcaCGgCCGCCu -3'
miRNA:   3'- -UGG-GCUGCaGCa---GCUGcaGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 44872 0.66 0.48794
Target:  5'- -gCCGuCGggggCGUCGGCGauucCGCCUGCg -3'
miRNA:   3'- ugGGCuGCa---GCAGCUGCa---GCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 27806 0.66 0.478259
Target:  5'- cCCCGGCGgUGccCGACGagaaguacCGCCCGUCg -3'
miRNA:   3'- uGGGCUGCaGCa-GCUGCa-------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 36888 0.66 0.478259
Target:  5'- -gCCGACGggcaccgCGUCGGCGUCacaaCCGgCg -3'
miRNA:   3'- ugGGCUGCa------GCAGCUGCAGcg--GGCgG- -5'
12775 3' -60.3 NC_003387.1 + 23044 0.66 0.478259
Target:  5'- uGCCCGGCGgCGUgcCGAUcaCGCacuaCGCCg -3'
miRNA:   3'- -UGGGCUGCaGCA--GCUGcaGCGg---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 18856 0.66 0.478259
Target:  5'- gACCUGuCGUCGccCGAgG-CGCUCGUCg -3'
miRNA:   3'- -UGGGCuGCAGCa-GCUgCaGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35999 0.66 0.478259
Target:  5'- gACUCGGCGUCGUCGccgaucacgAgGUCGaaCGUCu -3'
miRNA:   3'- -UGGGCUGCAGCAGC---------UgCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 44023 0.66 0.478259
Target:  5'- --gCGGC-UCGUCGACGUCGgUCGgCa -3'
miRNA:   3'- uggGCUGcAGCAGCUGCAGCgGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 50279 0.66 0.478259
Target:  5'- gGCCUGGCGcgCGUCcauGCgGUUGCgCUGCCa -3'
miRNA:   3'- -UGGGCUGCa-GCAGc--UG-CAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 17008 0.66 0.475373
Target:  5'- aGCUCGGucagcggcaggcCGUCGUCGcCGUacggcccccacacgUGCCCGCUc -3'
miRNA:   3'- -UGGGCU------------GCAGCAGCuGCA--------------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 50475 0.66 0.472496
Target:  5'- gGCCCgcGAgGUCGUCGGCaacuggcugacgcugGcCGCCUGaCCg -3'
miRNA:   3'- -UGGG--CUgCAGCAGCUG---------------CaGCGGGC-GG- -5'
12775 3' -60.3 NC_003387.1 + 43371 0.66 0.468674
Target:  5'- -aCCGGC-UCGUCGACGUCcugguGCUCGaCg -3'
miRNA:   3'- ugGGCUGcAGCAGCUGCAG-----CGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 12320 0.66 0.468674
Target:  5'- -gCCGACGUagGUC-ACGUgcaGCUCGCCg -3'
miRNA:   3'- ugGGCUGCAg-CAGcUGCAg--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 48903 0.66 0.468674
Target:  5'- cGCCCuGACGaUCGUUGuCG-CGCuuGCg -3'
miRNA:   3'- -UGGG-CUGC-AGCAGCuGCaGCGggCGg -5'
12775 3' -60.3 NC_003387.1 + 11372 0.66 0.468674
Target:  5'- gGCCgGGuCGUCGUuugCGGCGaucggCGCCaCGCUg -3'
miRNA:   3'- -UGGgCU-GCAGCA---GCUGCa----GCGG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.