miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 11372 0.66 0.468674
Target:  5'- gGCCgGGuCGUCGUuugCGGCGaucggCGCCaCGCUg -3'
miRNA:   3'- -UGGgCU-GCAGCA---GCUGCa----GCGG-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 15836 0.66 0.467721
Target:  5'- gACgCCGACGcggugccCGUCGGCGagcacaaUCGUCUGCUg -3'
miRNA:   3'- -UG-GGCUGCa------GCAGCUGC-------AGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 46058 0.67 0.459188
Target:  5'- cACCuCGAuCGccgCGUCGGCGUC-CCaugCGCCg -3'
miRNA:   3'- -UGG-GCU-GCa--GCAGCUGCAGcGG---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 45987 0.67 0.459188
Target:  5'- gGCCUGuAUGUCGagcggggcgagUCGACGgugaacUGCCCGCg -3'
miRNA:   3'- -UGGGC-UGCAGC-----------AGCUGCa-----GCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 23480 0.67 0.449806
Target:  5'- gACCCGcCGuUCGagCGGCGguucuggUGCCCgGCCa -3'
miRNA:   3'- -UGGGCuGC-AGCa-GCUGCa------GCGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 3342 0.67 0.449806
Target:  5'- gGCCCGcucguuuggcGCgGUCGUCGACGgcaucaccaaGCUgGCCu -3'
miRNA:   3'- -UGGGC----------UG-CAGCAGCUGCag--------CGGgCGG- -5'
12775 3' -60.3 NC_003387.1 + 17740 0.67 0.449806
Target:  5'- aACCCGGC-UUGcCGACGggcaccagGCCCGCg -3'
miRNA:   3'- -UGGGCUGcAGCaGCUGCag------CGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 3036 0.67 0.449806
Target:  5'- uCCCGAgGUgaaGgcgcaGGCGUuccCGCCCGCCu -3'
miRNA:   3'- uGGGCUgCAg--Cag---CUGCA---GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 27430 0.67 0.441453
Target:  5'- cGCgCCGACGUCGcccuggcugacugccCGAUGUgCGaCCUGCCc -3'
miRNA:   3'- -UG-GGCUGCAGCa--------------GCUGCA-GC-GGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 44415 0.67 0.44053
Target:  5'- -gCUGACGcugugcUCG-CGAUGcUGCCCGCCg -3'
miRNA:   3'- ugGGCUGC------AGCaGCUGCaGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 14397 0.67 0.44053
Target:  5'- gACUCGugGuggUCGUCGugGUCugagacuguGCCCGg- -3'
miRNA:   3'- -UGGGCugC---AGCAGCugCAG---------CGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 42646 0.67 0.44053
Target:  5'- -gCCGAcCGUCGUCcugGUCGC-CGCCg -3'
miRNA:   3'- ugGGCU-GCAGCAGcugCAGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 19142 0.67 0.439608
Target:  5'- gACCgGGCGguggcUCGUCGACG-CugucgagggcgcgGCCCGCa -3'
miRNA:   3'- -UGGgCUGC-----AGCAGCUGCaG-------------CGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 18039 0.67 0.439608
Target:  5'- uGCCCGAgGcggCGUuucagaacuucacCGGCGUUGCCCaGCg -3'
miRNA:   3'- -UGGGCUgCa--GCA-------------GCUGCAGCGGG-CGg -5'
12775 3' -60.3 NC_003387.1 + 40166 0.67 0.431364
Target:  5'- gGCCCGAuCGUCGUCGA-GcC-CUCGCa -3'
miRNA:   3'- -UGGGCU-GCAGCAGCUgCaGcGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 33733 0.67 0.431364
Target:  5'- gGCCC-ACGccgccagcUCGUCGAUGcUCGCCggggUGCCg -3'
miRNA:   3'- -UGGGcUGC--------AGCAGCUGC-AGCGG----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 22517 0.67 0.431364
Target:  5'- cGCUCGACGUCGgcguaccggcUCGGCGacugcuccUUGCCCGa- -3'
miRNA:   3'- -UGGGCUGCAGC----------AGCUGC--------AGCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 51961 0.67 0.431364
Target:  5'- uGCCCGACGUCGcUGcCG-CGgUgGCCg -3'
miRNA:   3'- -UGGGCUGCAGCaGCuGCaGCgGgCGG- -5'
12775 3' -60.3 NC_003387.1 + 37115 0.67 0.431364
Target:  5'- aACCCGuuGUCG-CGAuaaugguccgagUGUUGCCCGgCa -3'
miRNA:   3'- -UGGGCugCAGCaGCU------------GCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 30346 0.67 0.425918
Target:  5'- uGCCCGGCGgccacauucacgaGUCGAC--CGCCUGCa -3'
miRNA:   3'- -UGGGCUGCag-----------CAGCUGcaGCGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.