Results 41 - 60 of 190 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 46341 | 0.69 | 0.346249 |
Target: 5'- cGCCC-ACG-Caa-GGCGUCGCCCGCg -3' miRNA: 3'- -UGGGcUGCaGcagCUGCAGCGGGCGg -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 49501 | 0.71 | 0.260921 |
Target: 5'- cGCCCGGCGUCGacgugUCgcaauggggcugGACGUCGCa-GCCc -3' miRNA: 3'- -UGGGCUGCAGC-----AG------------CUGCAGCGggCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 35806 | 0.74 | 0.165902 |
Target: 5'- uGCCuCGGCGcCGUCGGCG-CGaugcucucguacCCCGCCa -3' miRNA: 3'- -UGG-GCUGCaGCAGCUGCaGC------------GGGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 9338 | 0.69 | 0.346249 |
Target: 5'- -gUCGACGUCGUCGAgcaccaggaCGUCGaCgaGCCg -3' miRNA: 3'- ugGGCUGCAGCAGCU---------GCAGC-GggCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 1304 | 0.74 | 0.156286 |
Target: 5'- cGCCCuggcgggcGACGUCGaCGACGUCGgguacgucgagauuUCCGCCg -3' miRNA: 3'- -UGGG--------CUGCAGCaGCUGCAGC--------------GGGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 40166 | 0.67 | 0.431364 |
Target: 5'- gGCCCGAuCGUCGUCGA-GcC-CUCGCa -3' miRNA: 3'- -UGGGCU-GCAGCAGCUgCaGcGGGCGg -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 18321 | 0.73 | 0.183896 |
Target: 5'- cGCCCGGCaacggCGUgGcCGUCguGCCCGCCg -3' miRNA: 3'- -UGGGCUGca---GCAgCuGCAG--CGGGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 17889 | 0.67 | 0.42231 |
Target: 5'- gGCCCGcGCGggcCGUCGACGaacauucucgaCGCCC-CCg -3' miRNA: 3'- -UGGGC-UGCa--GCAGCUGCa----------GCGGGcGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 658 | 0.67 | 0.412485 |
Target: 5'- cGCCCGAUGaaccauUCGaCGGCGacgcuuagcgaggUCGCgCGCCa -3' miRNA: 3'- -UGGGCUGC------AGCaGCUGC-------------AGCGgGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 31183 | 0.68 | 0.404551 |
Target: 5'- uGCCgGGCGgcaCGUCGaacGCGaCGCgCGCCu -3' miRNA: 3'- -UGGgCUGCa--GCAGC---UGCaGCGgGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 48565 | 0.68 | 0.39585 |
Target: 5'- uGCCaGGCGUgCaUCGACGccCGCCuCGCCg -3' miRNA: 3'- -UGGgCUGCA-GcAGCUGCa-GCGG-GCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 6599 | 0.68 | 0.362278 |
Target: 5'- aACCCGGUGUUccgCGACGacUCGUUCGCCg -3' miRNA: 3'- -UGGGCUGCAGca-GCUGC--AGCGGGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 18604 | 0.69 | 0.353399 |
Target: 5'- cGCaCCG-CGaCGUCGACGcCGCcgaucugCCGCCg -3' miRNA: 3'- -UG-GGCuGCaGCAGCUGCaGCG-------GGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 2846 | 0.69 | 0.323172 |
Target: 5'- gACgCCGACGacaugaUCGUCGGugagGUCGCcCCGCUg -3' miRNA: 3'- -UG-GGCUGC------AGCAGCUg---CAGCG-GGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 30008 | 0.69 | 0.315739 |
Target: 5'- cGCCCGAC-UgGUCGGuaUCGCCCagGCCg -3' miRNA: 3'- -UGGGCUGcAgCAGCUgcAGCGGG--CGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 36604 | 0.7 | 0.294218 |
Target: 5'- aACCCGGCGU--UCGAC-UCGCggcugcuggCCGCCg -3' miRNA: 3'- -UGGGCUGCAgcAGCUGcAGCG---------GGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 29384 | 0.7 | 0.280516 |
Target: 5'- cGCCggUGACGaCcUCGAUcUCGCCCGCCg -3' miRNA: 3'- -UGG--GCUGCaGcAGCUGcAGCGGGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 44733 | 0.71 | 0.254642 |
Target: 5'- cGCCCGGcCGgggCGcCGAagcgcagcaCGcCGCCCGCCg -3' miRNA: 3'- -UGGGCU-GCa--GCaGCU---------GCaGCGGGCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 24634 | 0.71 | 0.249097 |
Target: 5'- gACCCGACGcaccucgcccugcugCG-CGAgGUCGCCagCGCCg -3' miRNA: 3'- -UGGGCUGCa--------------GCaGCUgCAGCGG--GCGG- -5' |
|||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 37111 | 0.72 | 0.230759 |
Target: 5'- cCUCGACGUgcUCGACGUCGgCCggGCCg -3' miRNA: 3'- uGGGCUGCAgcAGCUGCAGCgGG--CGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home