miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 19458 0.72 0.36158
Target:  5'- cGGGCGCguGUCAgUGUGGGCGCCgaggccacCGCg -3'
miRNA:   3'- cUCCGCG--UAGUgGCACUUGUGGa-------GCG- -5'
12775 5' -55.1 NC_003387.1 + 19506 0.71 0.434903
Target:  5'- -cGGC-CAUCGCCGaGcGgGCCUCGCg -3'
miRNA:   3'- cuCCGcGUAGUGGCaCuUgUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 20177 0.74 0.297308
Target:  5'- aGGGCGCGguugaugCGCUGcu-GCGCCUCGCa -3'
miRNA:   3'- cUCCGCGUa------GUGGCacuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 20191 0.68 0.613818
Target:  5'- -cGGCGC--CGCCGUGAacuACGCaugCGCu -3'
miRNA:   3'- cuCCGCGuaGUGGCACU---UGUGga-GCG- -5'
12775 5' -55.1 NC_003387.1 + 21748 0.69 0.52566
Target:  5'- cGAGGCGC-UCGgCGUcAGCGCCaccgacgcgcuguUCGCg -3'
miRNA:   3'- -CUCCGCGuAGUgGCAcUUGUGG-------------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 21829 0.69 0.516122
Target:  5'- uGGGaGCGCAagCGCagcguGUGGACACCggCGCa -3'
miRNA:   3'- -CUC-CGCGUa-GUGg----CACUUGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 22442 0.66 0.701835
Target:  5'- cAGGCGCGg-GCCGcGGcguugGCCUCGCg -3'
miRNA:   3'- cUCCGCGUagUGGCaCUug---UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 22965 0.66 0.735071
Target:  5'- uGGGGCGCcccgGUCAUCGUGucgggcGGCGCCgacgacggcaaggccCGCa -3'
miRNA:   3'- -CUCCGCG----UAGUGGCAC------UUGUGGa--------------GCG- -5'
12775 5' -55.1 NC_003387.1 + 23019 0.67 0.62487
Target:  5'- uGGGCGC--CGCC--GAGCGCCUCGa -3'
miRNA:   3'- cUCCGCGuaGUGGcaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 23832 0.71 0.397155
Target:  5'- aGGGCGCcgCGCCGgGAcucgGCGCCgugcCGCu -3'
miRNA:   3'- cUCCGCGuaGUGGCaCU----UGUGGa---GCG- -5'
12775 5' -55.1 NC_003387.1 + 24210 0.68 0.613818
Target:  5'- -cGGCGCAccgCACCGgacGAAUugGCCUgaCGCg -3'
miRNA:   3'- cuCCGCGUa--GUGGCa--CUUG--UGGA--GCG- -5'
12775 5' -55.1 NC_003387.1 + 25040 0.66 0.712644
Target:  5'- uGGGUGCGUgACCGU---UACC-CGCg -3'
miRNA:   3'- cUCCGCGUAgUGGCAcuuGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 25209 0.69 0.505608
Target:  5'- --aGCGCAUCAUgGUGcugacguuuagcGGCACCUCGg -3'
miRNA:   3'- cucCGCGUAGUGgCAC------------UUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 25324 0.78 0.148713
Target:  5'- cAGcGCGCGUCguacacagagaacGCCGUGAACGCC-CGCa -3'
miRNA:   3'- cUC-CGCGUAG-------------UGGCACUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 25481 0.66 0.680021
Target:  5'- -cGGCGCAUC-CUGUcGGGCgACCU-GCa -3'
miRNA:   3'- cuCCGCGUAGuGGCA-CUUG-UGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 25912 0.66 0.680021
Target:  5'- -cGGCGCGcUCACCGac--CACCagCGCg -3'
miRNA:   3'- cuCCGCGU-AGUGGCacuuGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 26500 0.66 0.690956
Target:  5'- cGGGGCGa--CGCUGUGAaugaaGCGCCgcacgucgUCGCg -3'
miRNA:   3'- -CUCCGCguaGUGGCACU-----UGUGG--------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 26809 0.73 0.33639
Target:  5'- uGGGGCGCcguauUCGCCGUGuuuGGCAUCUUGg -3'
miRNA:   3'- -CUCCGCGu----AGUGGCAC---UUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 26850 0.66 0.680021
Target:  5'- -cGGCGa---GCUGUGGauGCACCUCGg -3'
miRNA:   3'- cuCCGCguagUGGCACU--UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 27311 0.74 0.289928
Target:  5'- aGAGcCGCGUCGCCGUGAuCGCCgCGa -3'
miRNA:   3'- -CUCcGCGUAGUGGCACUuGUGGaGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.