miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 8713 0.67 0.646982
Target:  5'- uGAGGUGCuGUCACCGU---UugCUgGCa -3'
miRNA:   3'- -CUCCGCG-UAGUGGCAcuuGugGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 8999 0.74 0.297308
Target:  5'- cGGGCucccGCAUgcCGCCGUcGAGCACCUgGCg -3'
miRNA:   3'- cUCCG----CGUA--GUGGCA-CUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 9612 0.68 0.602783
Target:  5'- -cGGCGCcgCGCCGU---CGCgCUCGUa -3'
miRNA:   3'- cuCCGCGuaGUGGCAcuuGUG-GAGCG- -5'
12775 5' -55.1 NC_003387.1 + 9691 0.68 0.557898
Target:  5'- cGAGGCGUGggGCCGUGAcggcggGCugaucgagggaaaAUCUCGCa -3'
miRNA:   3'- -CUCCGCGUagUGGCACU------UG-------------UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 10510 0.67 0.635927
Target:  5'- -cGGUGCgccgGUCGCCGUc--CugCUCGCg -3'
miRNA:   3'- cuCCGCG----UAGUGGCAcuuGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 10724 0.66 0.723374
Target:  5'- cAGGCgGCccCACCGcuUGAGCACCgcgGCg -3'
miRNA:   3'- cUCCG-CGuaGUGGC--ACUUGUGGag-CG- -5'
12775 5' -55.1 NC_003387.1 + 11468 0.68 0.602783
Target:  5'- cGGGGCGCucaaguucAUgGCCGacAAUGCCUCGUg -3'
miRNA:   3'- -CUCCGCG--------UAgUGGCacUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 11958 0.68 0.613818
Target:  5'- cGAGGCGCAccUCGgUGUaucGACGCC-CGCc -3'
miRNA:   3'- -CUCCGCGU--AGUgGCAc--UUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 12774 0.69 0.548161
Target:  5'- --cGCGCucguacucgAUCGCCGcaaUGcGCGCCUCGCa -3'
miRNA:   3'- cucCGCG---------UAGUGGC---ACuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 13337 0.69 0.526724
Target:  5'- cAGGCGCAcgagCACCucguACACCUCGg -3'
miRNA:   3'- cUCCGCGUa---GUGGcacuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 13421 0.74 0.289928
Target:  5'- -cGGCGC-UCGCCGgugUGAACuACCUCGg -3'
miRNA:   3'- cuCCGCGuAGUGGC---ACUUG-UGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 14044 0.69 0.516122
Target:  5'- -cGGCGCAcccgcacuuUCAgCGgaUGGGCGCCUgGCa -3'
miRNA:   3'- cuCCGCGU---------AGUgGC--ACUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 14692 0.69 0.536334
Target:  5'- cGGGGCGcCGUCGCCGcGAuccguugcggugcACGgCUUGCu -3'
miRNA:   3'- -CUCCGC-GUAGUGGCaCU-------------UGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 14872 0.67 0.646982
Target:  5'- cGAGGCGagcCGCCGggcgcagGggUgcccgACCUCGCu -3'
miRNA:   3'- -CUCCGCguaGUGGCa------CuuG-----UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 15564 0.66 0.690956
Target:  5'- gGAGGUGCA--GCCGauucGCGCCUgGCu -3'
miRNA:   3'- -CUCCGCGUagUGGCacu-UGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 15809 0.66 0.701835
Target:  5'- cGGGGUGCcgcuGUCGCCGccgguUGuGACGCCgaCGCg -3'
miRNA:   3'- -CUCCGCG----UAGUGGC-----AC-UUGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 16714 0.68 0.613818
Target:  5'- -cGGCGCAccacgaccUCGCCGUcGAucguGC-CCUCGUc -3'
miRNA:   3'- cuCCGCGU--------AGUGGCA-CU----UGuGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 18106 0.73 0.33639
Target:  5'- cGAGGCGCAggaUUAUgCGUGGACGCCguaCGUc -3'
miRNA:   3'- -CUCCGCGU---AGUG-GCACUUGUGGa--GCG- -5'
12775 5' -55.1 NC_003387.1 + 18721 0.66 0.680021
Target:  5'- aGGGCGCggCACuCGUcGAGCAgCgggcagCGCa -3'
miRNA:   3'- cUCCGCGuaGUG-GCA-CUUGUgGa-----GCG- -5'
12775 5' -55.1 NC_003387.1 + 18870 0.66 0.723374
Target:  5'- cGAGGCGC-UCGUCGcGAGCAUCaUCGa -3'
miRNA:   3'- -CUCCGCGuAGUGGCaCUUGUGG-AGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.